Merge branch 'Jalview-JS/jim/JAL-3253-JAL-3418' into Jalview-JS/JAL-3253-applet

[jalview.git] / help / html / features / columnFilterByAnnotation.html

diff --git a/help/html/features/columnFilterByAnnotation.html b/help/html/features/columnFilterByAnnotation.html
index c53844b..2651a10 100644 (file)
--- a/help/html/features/columnFilterByAnnotation.html
+++ b/help/html/features/columnFilterByAnnotation.html
@@ -31,13 +31,13 @@
     The 'Select/Hide by Annotation' window allows columns to be selected
     or hidden according to annotation rows on the alignment. The dialog
     box is opened <em>via</em> &quot;<strong>Select&#8594;Select/Hide
-      Columns by Annotation...</strong>&quot;, and different filters are
-    then presented for filtering data according to the selected annotation
+      Columns by Annotation...</strong>&quot;, and different filters are then
+    presented for filtering data according to the selected annotation
     row.
   </p>
   <table>
     <tr>
-      <td><img src="AnnotationColumnSelectionWithSM.gif"></td>
+      <td><img src="AnnotationColumnSelectionWithSM.png"></td>
       <td><img src="AnnotationColumnSelectionWithoutSM.gif"></td>
     </tr>
   </table>
@@ -76,7 +76,9 @@
         <li>Select whether to filter the alignment above or below
           the threshold.</li>
         <li>Change the threshold value with the slider, or enter it
-          in the text box.</li>
+          in the text box.
+       <li>The <em>As Percentage</em> checkbox allows thresholds to
+          be set as a percentage rather than absolute value.</li>
       </ul>
     <li><strong>Actions</strong>
       <ul>