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<p><strong>Multiple Alignment Views<strong></p>
-<p>Multiple alignment views allow's the same alignment to be viewed
-in many different ways, either as multiple alignment tabs, or
-simultaneously in linked alignment windows. A view is an independent
-visualization of the same alignment, so each may have a different
-ordering, colouring, row and column hiding and seuqence feature and
-annotation display setting, but alignment, feature and annotation edits
-are common to all, since this affects the underlying data.</p>
-<p>A new view is created using the <strong>"View→New
+<p>Multiple alignment views allows the same alignment to be viewed
+independently in many different ways simultaneously. Each view is an
+independent visualization of the same alignment, so each may have a
+different ordering, colouring, row and column hiding and seuqence
+feature and annotation display setting, but alignment, feature and
+annotation edits are common to all, since this affects the underlying
+data.</p>
+<p>Create a new view using the <strong>"View→New
View"</strong> menu item, or by pressing <strong>Control+T</strong>. A newly
created view will be identical to the view it was created from, but any
changes to the way the alignment is coloured or displayed will only
are gathered back into into a single tabbed alignment window by pressing
<strong>G</strong>, or by selecting <strong>"View→Gather"</strong>).
</p>
-<p><strong>Tree Viewers, PCA Viewers, and Multiple Views</strong></p>
+<p><strong>Structure and Analysis Viewers and Multiple
+Views</strong></p>
<p>A tree calculated on a particular view, or loaded onto it, is by
default associated with just that view. However, the <a
href="../calculations/treeviewer.html">Tree Viewer's</a> <strong>"View→Associate
leaves"</strong> submenu allows a tree's view association to be changed to
to any or all other views.</p>
-<p>The results of a <a href="../calculations/pca.html">PCA calculation</a> on a particular view
-may also be associated with other views, using the <strong>"Associate
+<p>The results of a <a href="../calculations/pca.html">PCA
+calculation</a> on a particular view may also be associated with other
+views, using the PCA Viewer's <strong>"View→Associate
Nodes"</strong> submenu.</p>
+<p>A <a href="pdbviewer.html">PDB Structure Viewer</a> opened on a
+structure associated with a sequence in a particular view will also, by
+default, only be associated with the sequence as it is displayed in that
+view. The "View→Associate View" submenu allows the
+association of alternative views.</p>
<p><em>Multiple Views were introduced in Jalview 2.2</em></p>
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git://source.jalview.org / jalview.git / blobdiff