+++ /dev/null
-<html>
-<!--
- * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
- * Copyright (C) $$Year-Rel$$ The Jalview Authors
- *
- * This file is part of Jalview.
- *
- * Jalview is free software: you can redistribute it and/or
- * modify it under the terms of the GNU General Public License
- * as published by the Free Software Foundation, either version 3
- * of the License, or (at your option) any later version.
- *
- * Jalview is distributed in the hope that it will be useful, but
- * WITHOUT ANY WARRANTY; without even the implied warranty
- * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
- * PURPOSE. See the GNU General Public License for more details.
- *
- * You should have received a copy of the GNU General Public License
- * along with Jalview. If not, see <http://www.gnu.org/licenses/>.
- * The Jalview Authors are detailed in the 'AUTHORS' file.
- -->
-<head>
-<title>Overview Window</title>
-</head>
-<body>
- <p>
- <strong>View→Overview window</strong>
- </p>
- <p>Select the overview window menu item to get a navigable image
- of the whole alignment. By default, gaps are shown as dark grey, in
- the overview (since 2.10.2b1).</p>
- <p>The red box indicates the currently viewed region of the
- alignment, this may be moved by clicking and dragging with the
- mouse.</p>
- <p>Click anywhere else in the overview to centre the view on that
- position</p>
- <p></p>
- <p>
- <strong>Hiding hidden regions in the overview</strong>
- </p>
- <p>
- Hidden sequences and columns are by default shown as dark-grey rows
- and columns in the overview. Hidden regions can also be omitted
- entirely (to make the Overview 'WYSIWIG') by <strong>Right-clicking</strong>
- (or CMD-Clicking) to open the overview's popup menu.<br /> <br />
- <em>The option to include/exclude hidden regions in the
- overview was introduced in Jalview 2.10.2</em>.
-
- <p>
- <img src="overview.png" width="800" height="196" alt="1hdc.pfam example alignment">
- </p>
- <p> </p>
- <em>Previous to 2.10.2b1, gaps were white, and sequences shown as
- dark grey unless coloured.</em>
-</body>
-</html>