or to cross-reference other bioinformatics websites before retrieving
a sequence data in jalview. The underlying technology is provided by
EBI and is based on Apache Solr which is a text based search engine.</p>
-
<p>
The PDB Sequence Fetcher interface can be opened by selecting <strong>PDB</strong>
as the choice database from the <strong>'Select Database
Retrieval Source'</strong> interface of <a href="seqfetch.html">Sequence
Fetcher</a>.
</p>
- <br>
-
- <img src="pdbseqfetcher.png" align="left"
- alt="PDB sequence fetcher (introduced in Jalview 2.x.x)">
-
- <br>
<p>
- <strong>Searching the PDB Database</strong><br> Once the
- interface is opened, typing in the search text box will execute a live
- query to the PDB database and display the results on-the-fly as seen
- in the screen-shot above. Use the drop-down menu to select a specific
- field to search by in the PDB database, the default option is <strong>'ALL'</strong>.
- Furthermore, the PDB search interface also provides the following
- functionalities:
+ <img src="pdbseqfetcher.png" align="left"
+ alt="PDB sequence fetcher (introduced in Jalview 2.x.x)">
+ </p>
+
+ <strong>Searching the PDB Database</strong>
+ <br> Once the interface is opened, typing in the search text box
+ will execute a live query to the PDB database and display the results
+ on-the-fly as seen in the screen-shot above. Use the drop-down menu to
+ select a specific field to search by in the PDB database, the default
+ option is
+ <strong>'ALL'</strong>. Furthermore, the PDB search interface also
+ provides the following functionalities:
<ul>
<li>Retrieving a unique chain for a PDB entry: <br>To
retrieve a specific chain for a PDB entry, append the PDB ID with a