<body>
<strong>PDB Sequence Fetcher</strong>
- <p>From Jalview 2.9 a specialised interface was introduced for
+ <p>From Jalview 2.9, a specialised interface was introduced for
fast and efficient discovery/retrieval of sequence data from the PDB
database. The introduced interface enables live querying of PDB data
on-the-fly thereby eliminating the need to memorise database accession
or to manually cross-reference other bioinformatics websites before retrieving
- sequence data in Jalview. The underlying technology is provided by
+ sequence data in Jalview. The underlying infrastructure is provided by
EBI and is based on Apache Solr which is a text based search engine.</p>
<p>
- The PDB Sequence Fetcher interface can be opened by selecting <strong>PDB</strong>
- as the choice database from the <strong>'Select Database
- Retrieval Source'</strong> interface of <a href="seqfetch.html">Sequence
- Fetcher</a>.
+ The PDB Sequence Fetcher interface can be accessed from <b>"File →Fetch Sequence(s) →Select Database →PDB"</b> click the ok button after selecting PDB from the 'Select Database
+ Retrieval Source' interface.
</p>
<p>
<img src="pdbseqfetcher.png" align="left"
a result is displayed on-the-fly as seen in the screenshot above.</p>
<p>Use the drop-down menu to select a specific field to search by in the PDB database, the default
- option is <strong>'ALL'</strong>.</p>
+ option is 'ALL'.</p>
<p> Furthermore, the PDB search interface also provides the following functionalities:</p>
<ul>
</ul>
<p>
<strong>Customising displayed meta-data</strong> <br>To change
- the displayed meta-data in the search result, click the <strong>'Configure
- Displayed Columns'</strong> tab, then tick off the options wanted.
+ the displayed meta-data in the search result, click the 'Configure
+ Displayed Columns' tab, then tick off the options wanted.
</p>
<p>
<strong>Importing Sequence</strong><br> After querying the PDB
git://source.jalview.org / jalview.git / blobdiff