Preferences updated

[jalview.git] / help / html / features / preferences.html

diff --git a/help/html/features/preferences.html b/help/html/features/preferences.html
index e9ec458..d6f8d65 100755 (executable)
--- a/help/html/features/preferences.html
+++ b/help/html/features/preferences.html
@@ -18,9 +18,11 @@
 <p><em>Font</em> - The default font name, size and style can be set for a new alignment \r
   window. </p>\r
 <p><em>Gap Symbol</em> - The default gap symbol may be set to either &quot;-&quot; or &quot;.&quot;</p>\r
-<p><em>Colour</em> - The default colour scheme for a new alignment window. If the chosen \r
-  option is &quot;User Defined&quot; then the last User Defined Colour loaded \r
-  or saved via the User Defined Colours panel will be loaded. </p>\r
+<p><em>Colour</em> - The default colour scheme for a new alignment window. If \r
+  the chosen option is &quot;User Defined&quot; then the last User Defined Colour \r
+  loaded or saved via the User Defined Colours panel will be loaded. </p>\r
+<p><em>Sort by</em> - When the alignment is loaded in, it will can be sorted by \r
+  Id or pairwise identity.</p>\r
 <p><em>Open file</em> - If this is selected then the default alignment file will \r
   be opened when Jalview is started. You can change the default file by clicking \r
   on file name and either typing in the file path or selecting it from the file \r
@@ -47,5 +49,16 @@
   box &quot;Use a Proxy Server&quot; and enter the address and port details as \r
   necessary. Web Services will not work if you are using a proxy server and do \r
   not enter the settings here.</p>\r
+<p>The &quot;Export&quot; tab has a selection box allowing the user to set a default \r
+  rendering style for EPS export. &quot;Lineart&quot; will produce an accurate \r
+  representation of the visible alignment in Jalview, all the characters will \r
+  be graphics objects. &quot;Text&quot; will produce a much smaller file and will \r
+  rely on the software you use to view the EPS file, such as Adobe Illustrator, \r
+  having the same font as the file was created with. You will only be able to \r
+  edit text in an EPS file if you select the &quot;Text&quot; option.<br>\r
+  Choose &quot;Prompt each time&quot; to select between Lineart and Text each \r
+  time you make an EPS file.</p>\r
+<p>&nbsp;</p>\r
+<p>&nbsp;</p>\r
 </body>\r
 </html>\r