JAL-1528 Chimera Help doc + fixes to setting colours

[jalview.git] / help / html / features / preferences.html

diff --git a/help/html/features/preferences.html b/help/html/features/preferences.html
index 1831c3e..b2d8b93 100755 (executable)
--- a/help/html/features/preferences.html
+++ b/help/html/features/preferences.html
@@ -121,6 +121,8 @@ annotation will be shown on the alignment when available.
 <p><em>Add Temperature Factor annotation to alignment</em> - if selected, PDB Temperature Factor
 annotation will be shown on the alignment when available. 
 <p><em>Default structure viewer</em> - choose JMOL or CHIMERA for viewing 3D structures. 
+<p><em>Path to Chimera program</em> - Optional, as Jalview will search standard installation paths for Windows, Linux or MacOS. 
+If you have installed Chimera in a non-standard location, you can specify it here. Enter the full path to the Chimera executable program.  
 
 <p><a name="connections"><strong>&quot;Connections&quot;
 Preferences tab</strong></a></p>