<head><title>Sequence Fetcher</title></head>\r
<body>\r
<p><strong>Sequence Fetcher</strong></p>\r
-<p>The Sequence Fetcher can be started from the main desktop "File" \r
- menu or from a particular alignment window.</p>\r
-<p>Select which database to fetch your sequence from and enter the sequence id. \r
- If you are retrieving sequences from PDB database and you know which chain you \r
- would like to retrieve, append the chain id after colon to the PDB id. eg 1GAQ:A</p>\r
-<p>The Sequence Fetcher uses WSDBFetch provided by the European Bioinformatics \r
- Institute. If you use this service please quote:</p>\r
+<p>Jalview can retrieve sequences from certain databases via the\r
+WSDBFetch service provided by the European Bioinformatics Institute.</p>\r
+<p>A Sequence Fetcher dialog box can be opened via the "File" \r
+ menu on the main desktop in order to retrieve sequences as a new\r
+ alignment, or opened via the "File" menu of an existing alignment\r
+ to import additional sequences.\r
+</p>\r
+<p>Select the database you want to retrieve sequences from, and enter a\r
+ the database id (or a semi-colon separated list of several ids) in\r
+ the text box. Finally, press OK to initiate the retrieval.</p>\r
+<p>\r
+ If you are retrieving sequences from the PDB, you can retrieve\r
+ specific chains by appending a colon and the chain id to the PDB\r
+ id. For example :<br><pre> 1GAQ:A</pre></p>\r
+<p>If you use the sequence fetcher in work for publication, then please cite:</p>\r
<p>Pillai S., Silventoinen V., Kallio K., Senger M., Sobhany S., Tate J., Velankar \r
S., Golovin A., Henrick K., Rice P., Stoehr P., Lopez R. <br>\r
SOAP-based services provided by the European Bioinformatics Institute.<br>\r
git://source.jalview.org / jalview.git / blobdiff