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preliminary documentation for DNA->protein codon features and EMBL coding region...
[jalview.git] / help / html / features / seqmappings.html
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+<html>
+<head>\r
+<title>Mapping Between Different Sequences</title>\r
+</head>\r
+<body>
+<p><strong>Mapping Between Different Sequences</strong></p>\r
+<p>A new feature in Jalview 2.8 is the ability to map \r
+between sequences in different domains, based on alignment, \r
+or by the use of explicit mappings provided by databases.\r
+</p>\r
+<p>The most familiar mapping is the one used to identify\r
+the coordinates corresponding to a displayed sequence when\r
+viewing a PDB file associated with a sequence (see \r
+<a href="viewingpdbs.html">&quot;Viewing PDB Files&quot;</a> \r
+for more information.</p>\r
+<p>The newest form of mapping supported by Jalview is the \r
+correspondence between DNA and protein sequences. This mapping\r
+can be imported directly from EMBL and EMBLCDS database records \r
+retrieved by the <a href="seqfetch.html">Sequence Fetcher</a>,\r
+or by the definition of <a href="codingfeatures.html">coding regions</a>. \r
+</body>
+</html>
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