<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8)
- * Copyright (C) 2012 J Procter, AM Waterhouse, LM Lui, J Engelhardt, G Barton, M Clamp, S Searle
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
*
* This file is part of Jalview.
*
* Jalview is free software: you can redistribute it and/or
* modify it under the terms of the GNU General Public License
- * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
*
* Jalview is distributed in the hope that it will be useful, but
* WITHOUT ANY WARRANTY; without even the implied warranty
* of MERCHANTABILITY or FITNESS FOR A PARTICULAR
* PURPOSE. See the GNU General Public License for more details.
*
- * You should have received a copy of the GNU General Public License along with Jalview. If not, see <http://www.gnu.org/licenses/>.
--->
+ * You should have received a copy of the GNU General Public License
+ * along with Jalview. If not, see <http://www.gnu.org/licenses/>.
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
+ -->
<head>
<title>Mapping Between Different Sequences</title>
</head>
<body>
-<p><strong>Mapping Between Different Sequences</strong></p>
-<p>A new feature in Jalview 2.3 is the ability to map between sequences in different
- domains, based on alignment, or by the use of explicit mappings provided by
- databases. </p>
-<p>The most familiar mapping is the one used to identify
-the coordinates corresponding to a displayed sequence when
-viewing a PDB file associated with a sequence (see
-<a href="viewingpdbs.html">"Viewing PDB Files"</a>
-for more information.</p>
-<p>The newest form of mapping supported by Jalview is the
-correspondence between DNA and protein sequences. This mapping
-can be imported directly from EMBL and EMBLCDS database records
-retrieved by the <a href="seqfetch.html">Sequence Fetcher</a>,
-and allows sequence features to be mapped directly from Uniprot
-das sources to their coding region on EMBL sequence records.
+ <p>
+ <strong>Mapping Between Different Sequences</strong>
+ </p>
+ <!-- TODO: review and check if this page is really needed -->
+ <p>A new feature in Jalview 2.3 is the ability to map between
+ sequences in different domains, based on alignment, or by the use of
+ explicit mappings provided by databases.</p>
+ <p>
+ The most familiar mapping is the one used to identify the
+ coordinates corresponding to a displayed sequence when viewing a PDB
+ file associated with a sequence (see <a href="viewingpdbs.html">"Viewing
+ PDB Files"</a> for more information.
+ </p>
+ <p>
+ The newest form of mapping supported by Jalview is the
+ correspondence between DNA and protein sequences. This mapping can
+ be imported directly from EMBL and EMBLCDS database records
+ retrieved by the <a href="seqfetch.html">Sequence Fetcher</a>, and
+ allows sequence features to be mapped directly from UniProt das
+ sources to their coding region on EMBL sequence records.
+ </p>
+ <em><a href="siftsmapping.html">SIFTS Mapping</a> between PDB and
+ UniProt data was introduced in Jalview 2.10</em>
</body>
</html>
git://source.jalview.org / jalview.git / blobdiff