JAL-2446 merged to spike branch

[jalview.git] / help / html / features / splitView.html

diff --git a/help/html/features/splitView.html b/help/html/features/splitView.html
index ed5bef3..3862c39 100644 (file)
--- a/help/html/features/splitView.html
+++ b/help/html/features/splitView.html
@@ -47,27 +47,31 @@
   <ul>
     <li>Mouseover or scrolling of either alignment is followed by
       the other (unless you turn off <strong><a
-        href="../menus/alwview.html"
-      >"View&#8594;Automatic Scrolling"</a></strong>)
+        href="../menus/alwview.html">"View&#8594;Automatic
+          Scrolling"</a></strong>)
     </li>
     <li>On selecting rows, columns or regions in one alignment, the
       corresponding selection is made in the other</li>
     <li>Sequence ordering in one alignment (using the cursor, or <strong><a
-        href="../calculate/sorting.html"
-      >"Calculate&#8594;Sort")</a></strong> is also applied to the other
+        href="../calculations/sorting.html">"Calculate&#8594;Sort")</a></strong>
+      is also applied to the other
     </li>
     <li>Editing (gap insertion / deletion) in the protein alignment
       is reflected in the cDNA (but not vice versa)</li>
     <li>Any trees imported or created with <strong><a
-        href="../calculations/tree.html"
-      >"Calculate Tree"</a></strong> on one of the views allow both cDNA and
-      Protein views to be grouped, coloured or sorted.
+        href="../calculations/tree.html">"Calculate Tree"</a></strong> on
+      one of the views allow both cDNA and Protein views to be grouped,
+      coloured or sorted.
     </li>
     <li>To allow for the different widths in cDNA and Protein
       alignments, the <strong><a href="../menus/alwformat.html">"Format&#8594;Font"</a></strong>
       menu option has an option 'Scale protein residues to codons'. This
       option will make each protein residue the same width as a DNA
-      codon (so the alignments 'line up' vertically)
+      codon (so the alignments 'line up' vertically).<br/><br/>
+      <a name="mirror"/>The 'Use same 
+      font for cDNA and peptide' checkbox, when enabled, ensures that font or
+       font-size changes in either the cDNA or Protein alignment will also 
+       be mirrored. (<em>Added in 2.10.2</em>)
     </li>
     <li><strong>"View&#8594;Protein"</strong> (in the cDNA panel)
       or <strong>"View&#8594;Nucleotide"</strong> (in the protein panel)
@@ -75,16 +79,15 @@
       panels.</li>
     <li>Panel heights are adjusted dragging the divider between
       them using the mouse</li>
-    <li><a href="menus/alwview.html"><strong>"View&#8594;New
+    <li><a href="../menus/alwview.html"><strong>"View&#8594;New
           View / Expand Views / Gather Views"</strong></a> behave as for a normal
       alignment window, but always create new views as Split Frames</li>
   </ul>
   <p>
     An alignment annotation row on the protein alignment shows the <strong><a
-      href="../calculations/consensus.html"
-    >cDNA consensus</a></strong> for each peptide column.<br /> This consensus may
-    reveal variation in nucleotides coding for conserved protein
-    residues.
+      href="../calculations/consensus.html">cDNA consensus</a></strong> for
+    each peptide column.<br /> This consensus may reveal variation in
+    nucleotides coding for conserved protein residues.
   </p>
 
   <a name="opensplit" />