<body>
<p>
- <strong>Structure Chooser</strong>
+ <strong>Structure Chooser Dialog Box</strong>
</p>
<p>
- The Structure Chooser interface allows you to interactively select
- which PDB structures to view for the currently selected set of
+ The Structure Chooser allows you to select
+ 3D structures to view for the currently selected set of
sequences. It is opened by selecting the <strong>"3D
- Structure Data.."</strong> option from the Sequence ID panel's <a
+ Structure Data..."</strong> option from the Sequence ID panel's <a
href="../menus/popupMenu.html">pop-up menu</a>. The dialog
provides:
</p>
<p>
<strong>Selecting and Viewing Structures</strong>
</p>
+ <p>The drop-down menu offers different options for structure
+ discovery; the 'Cached' view is shown automatically if existing
+ structure data has been imported for the selected sequences, and if
+ none is available, the import PDB/mmCIF file options are shown.</p>
<p>
Once one or more structures have been selected, pressing the <strong>View</strong>
- button will import them into <a
+ or <strong>Add</strong> button will import them <a
href="viewingpdbs.html#afterviewbutton">a new or existing
- structure view</a>.
+ structure view</a>. When multiple views are available, use the
+ drop-down menu to pick the target viewer for the structures.
</p>
<p>
<strong>Automated discovery of structure data</strong>
criteria (e.g. worst quality rather than best).</p>
<p>
- <img src="schooser_main.png" style="width: 464px; height: 369px;">
+ <img src="schooser_main.png" style="width: 499px; height: 437px;">
<!-- <p><img src="schooser_config.png" style="width: 463px; height: 369px; ">
<p><img src="schooser_drop-down.png" style="width: 464px; height: 368px; ">
<p><img src="schooser_enter-id.png" style="width: 467px; height: 373px; ">
<p><img src="schooser_from-file.png" style="width: 468px; height: 370px; ">
<p><img src="schooser_cached.png"> -->
- <br>The screenshot above shows the Structure Chooser interface
- along with the meta-data of auto-discovered structures for the
- sample alignment. If no structures were
- auto-discovered, options for manually associating PDB records will be shown (see below).
- <p>
+ <br>The screenshot above shows the Structure Chooser displayed after
+ selecting all the sequences in the Jalview example project. If no
+ structures were auto-discovered, options for manually associating
+ PDB records will be shown (see below).<p>
<strong>Exploration of meta-data for available structures</strong>
</p>
<p>Information on each structure available is displayed in columns
Columns' tab and tick the columns which you want to see.</p>
<p>
<img src="schooser_enter-id.png"
- style="width: 464px; height: 369px;">
+ style="width: 464px; height: 173px;">
<br/>
<strong>Manual selection/association of PDB files with
Sequences</strong>
git://source.jalview.org / jalview.git / blobdiff