JAL-1919 JAL-1479 user help docs

[jalview.git] / help / html / features / viewingpdbs.html

diff --git a/help/html/features/viewingpdbs.html b/help/html/features/viewingpdbs.html
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@@ -121,6 +121,19 @@
   </p>
 
   <p>
+    <strong>Importing PDB Entries or files in mmCIF format</strong><br>
+    <a href="mmcif.html">mmCIF file format</a> provides an alternative means for 
+    importing 3D structure data from flat file and EMBL-PDBe 
+    web-service. To enable mmCIF as the default format for 
+    importing PBD sequences from the PDB sequence fetcher, add or modify the 
+    property  
+    <code>DEFAULT_STRUCTURE_FORMAT=mmCIF</code> in Jalview properties file. 
+    Once this is done, the steps followed in retrieving PDB format files above can 
+    be followed to obtain the same data with mmCIF. <em>mmCIF format file support was added in Jalview 2.9.1.</em></p>
+    
+   
+
+  <p>
     <strong>Associating a large number of PDB files to
       sequences in an alignment</strong><br /> It is often the case when working
     with structure alignments that you will have a directory of PDB