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JAL-3224 JAL-3225 Fixed help image mangling, moved help to help/help and added this...
[jalview.git] / help / html / features / wrap.html
diff --git a/help/html/features/wrap.html b/help/html/features/wrap.html
deleted file mode 100755 (executable)
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--- a/help/html/features/wrap.html
+++ /dev/null
@@ -1,344 +0,0 @@
-<html>
-<!--
- * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
- * Copyright (C) $$Year-Rel$$ The Jalview Authors
- * 
- * This file is part of Jalview.
- * 
- * Jalview is free software: you can redistribute it and/or
- * modify it under the terms of the GNU General Public License 
- * as published by the Free Software Foundation, either version 3
- * of the License, or (at your option) any later version.
- *  
- * Jalview is distributed in the hope that it will be useful, but 
- * WITHOUT ANY WARRANTY; without even the implied warranty 
- * of MERCHANTABILITY or FITNESS FOR A PARTICULAR 
- * PURPOSE.  See the GNU General Public License for more details.
- * 
- * You should have received a copy of the GNU General Public License
- * along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
- * The Jalview Authors are detailed in the 'AUTHORS' file.
- -->
-<head>
-<title>Wrap Alignment</title>
-</head>
-
-<body>
-  <p>
-    <strong>View&#8594;Wrap alignment </strong>
-  </p>
-  <p>Use this feature to wrap an alignment to the screen width.</p>
-  <p>All output (HTML, Printing, JPG etc) will also be in this
-    wrapped format.</p>
-  <p>This is most useful when looking at alignments with less than
-    20 sequences.</p>
-  <table width="480" border="1">
-    <tr>
-      <td>
-
-        <table border="0" cellpadding="0" cellspacing="0">
-          <tr>
-            <td colspan="6">&nbsp;</td>
-            <td colspan="9">10<br> |
-            </td>
-            <td></td>
-            <td colspan="9">20<br> |
-            </td>
-            <td></td>
-          </tr>
-          <tr>
-            <td nowrap>ADHR_DROPS/7-107&nbsp;&nbsp;</td>
-            <td bgcolor="#e6331a">K</td>
-            <td bgcolor="#1ab3b3">H</td>
-            <td bgcolor="#80b3e6">V</td>
-            <td bgcolor="#80b3e6">C</td>
-            <td bgcolor="#1ab3b3">Y</td>
-            <td bgcolor="#80b3e6">V</td>
-            <td bgcolor="#80b3e6">A</td>
-            <td>D</td>
-            <td bgcolor="#80b3e6">C</td>
-            <td bgcolor="#e6994d">G</td>
-            <td bgcolor="#e6994d">G</td>
-            <td bgcolor="#80b3e6">I</td>
-            <td>A</td>
-            <td bgcolor="#80b3e6">L</td>
-            <td>E</td>
-            <td bgcolor="#1acc1a">T</td>
-            <td bgcolor="#1acc1a">S</td>
-            <td bgcolor="#e6331a">K</td>
-            <td bgcolor="#80b3e6">V</td>
-            <td bgcolor="#80b3e6">L</td>
-            <td bgcolor="#80b3e6">M</td>
-            <td>T</td>
-            <td bgcolor="#e6331a">K</td>
-            <td>N</td>
-            <td bgcolor="#80b3e6">I</td>
-            <td bgcolor="#80b3e6">A</td>
-          </tr>
-          <tr>
-            <td nowrap>ADH_DROHE/5-105&nbsp;&nbsp;</td>
-            <td>S</td>
-            <td>N</td>
-            <td bgcolor="#80b3e6">I</td>
-            <td bgcolor="#80b3e6">I</td>
-            <td bgcolor="#80b3e6">F</td>
-            <td bgcolor="#80b3e6">V</td>
-            <td bgcolor="#80b3e6">A</td>
-            <td bgcolor="#e6994d">G</td>
-            <td bgcolor="#80b3e6">L</td>
-            <td bgcolor="#e6994d">G</td>
-            <td bgcolor="#e6994d">G</td>
-            <td bgcolor="#80b3e6">I</td>
-            <td bgcolor="#e6994d">G</td>
-            <td bgcolor="#80b3e6">L</td>
-            <td bgcolor="#cc4dcc">D</td>
-            <td bgcolor="#1acc1a">T</td>
-            <td bgcolor="#1acc1a">S</td>
-            <td bgcolor="#e6331a">R</td>
-            <td>E</td>
-            <td bgcolor="#80b3e6">I</td>
-            <td bgcolor="#80b3e6">V</td>
-            <td>K</td>
-            <td>S</td>
-            <td bgcolor="#e6994d">G</td>
-            <td bgcolor="#cccc00">P</td>
-            <td>K</td>
-          </tr>
-          <tr>
-            <td nowrap>PGDH_HUMAN/6-106&nbsp;&nbsp;</td>
-            <td bgcolor="#e6331a">K</td>
-            <td bgcolor="#80b3e6">V</td>
-            <td bgcolor="#80b3e6">A</td>
-            <td bgcolor="#80b3e6">L</td>
-            <td bgcolor="#80b3e6">V</td>
-            <td bgcolor="#1acc1a">T</td>
-            <td bgcolor="#e6994d">G</td>
-            <td>A</td>
-            <td bgcolor="#80b3e6">A</td>
-            <td>Q</td>
-            <td bgcolor="#e6994d">G</td>
-            <td bgcolor="#80b3e6">I</td>
-            <td bgcolor="#e6994d">G</td>
-            <td>R</td>
-            <td>A</td>
-            <td>F</td>
-            <td>A</td>
-            <td bgcolor="#cc4dcc">E</td>
-            <td bgcolor="#80b3e6">A</td>
-            <td bgcolor="#80b3e6">L</td>
-            <td bgcolor="#80b3e6">L</td>
-            <td>L</td>
-            <td bgcolor="#e6331a">K</td>
-            <td bgcolor="#e6994d">G</td>
-            <td>.</td>
-            <td bgcolor="#80b3e6">A</td>
-          </tr>
-          <tr>
-            <td height="5"></td>
-          </tr>
-          <tr>
-            <td colspan="6">&nbsp;</td>
-            <td colspan="9">36<br> |
-            </td>
-            <td></td>
-            <td colspan="9">46<br> |
-            </td>
-            <td></td>
-          </tr>
-          <tr>
-            <td nowrap>ADHR_DROPS/7-107&nbsp;&nbsp;</td>
-            <td bgcolor="#e6331a">K</td>
-            <td bgcolor="#80b3e6">L</td>
-            <td bgcolor="#80b3e6">A</td>
-            <td bgcolor="#80b3e6">I</td>
-            <td bgcolor="#80b3e6">L</td>
-            <td>Q</td>
-            <td>S</td>
-            <td bgcolor="#80b3e6">V</td>
-            <td>E</td>
-            <td bgcolor="#1acc1a">N</td>
-            <td bgcolor="#cccc00">P</td>
-            <td bgcolor="#cccc00">P</td>
-            <td>.</td>
-            <td>.</td>
-            <td>.</td>
-            <td>.</td>
-            <td>.</td>
-            <td>.</td>
-            <td>.</td>
-            <td>.</td>
-            <td>A</td>
-            <td bgcolor="#80b3e6">I</td>
-            <td bgcolor="#80b3e6">A</td>
-            <td bgcolor="#1acc1a">Q</td>
-            <td bgcolor="#80b3e6">L</td>
-            <td>Q</td>
-          </tr>
-          <tr>
-            <td nowrap>ADH_DROHE/5-105&nbsp;&nbsp;</td>
-            <td>N</td>
-            <td bgcolor="#80b3e6">L</td>
-            <td bgcolor="#80b3e6">V</td>
-            <td bgcolor="#80b3e6">V</td>
-            <td bgcolor="#80b3e6">L</td>
-            <td bgcolor="#cc4dcc">D</td>
-            <td>R</td>
-            <td bgcolor="#80b3e6">I</td>
-            <td bgcolor="#cc4dcc">D</td>
-            <td bgcolor="#1acc1a">N</td>
-            <td bgcolor="#cccc00">P</td>
-            <td bgcolor="#80b3e6">A</td>
-            <td>A</td>
-            <td>.</td>
-            <td>.</td>
-            <td>.</td>
-            <td>.</td>
-            <td>.</td>
-            <td>.</td>
-            <td>.</td>
-            <td>.</td>
-            <td bgcolor="#80b3e6">I</td>
-            <td bgcolor="#80b3e6">A</td>
-            <td bgcolor="#cc4dcc">E</td>
-            <td bgcolor="#80b3e6">L</td>
-            <td>K</td>
-          </tr>
-          <tr>
-            <td nowrap>PGDH_HUMAN/6-106&nbsp;&nbsp;</td>
-            <td bgcolor="#e6331a">K</td>
-            <td bgcolor="#80b3e6">V</td>
-            <td bgcolor="#80b3e6">A</td>
-            <td bgcolor="#80b3e6">L</td>
-            <td bgcolor="#80b3e6">V</td>
-            <td bgcolor="#cc4dcc">D</td>
-            <td>W</td>
-            <td>N</td>
-            <td>L</td>
-            <td>E</td>
-            <td bgcolor="#80b3e6">A</td>
-            <td bgcolor="#e6994d">G</td>
-            <td>.</td>
-            <td>.</td>
-            <td>.</td>
-            <td>.</td>
-            <td>.</td>
-            <td>.</td>
-            <td>.</td>
-            <td>V</td>
-            <td>Q</td>
-            <td bgcolor="#80b3e6">C</td>
-            <td>K</td>
-            <td>A</td>
-            <td bgcolor="#80b3e6">A</td>
-            <td>L</td>
-          </tr>
-          <tr>
-            <td height="5"></td>
-          </tr>
-          <tr>
-            <td colspan="6">&nbsp;</td>
-            <td colspan="9">62<br> |
-            </td>
-            <td></td>
-            <td colspan="9">72<br> |
-            </td>
-            <td></td>
-          </tr>
-          <tr>
-            <td nowrap>ADHR_DROPS/7-107&nbsp;&nbsp;</td>
-            <td>S</td>
-            <td bgcolor="#80b3e6">I</td>
-            <td>K</td>
-            <td bgcolor="#1ab3b3">H</td>
-            <td>S</td>
-            <td>.</td>
-            <td>.</td>
-            <td>.</td>
-            <td>.</td>
-            <td>T</td>
-            <td>Q</td>
-            <td bgcolor="#80b3e6">I</td>
-            <td bgcolor="#80b3e6">F</td>
-            <td bgcolor="#80b3e6">F</td>
-            <td bgcolor="#80b3e6">W</td>
-            <td>T</td>
-            <td bgcolor="#80b3e6">F</td>
-            <td bgcolor="#cc4dcc">D</td>
-            <td bgcolor="#80b3e6">V</td>
-            <td bgcolor="#1acc1a">T</td>
-            <td bgcolor="#80b3e6">M</td>
-            <td bgcolor="#80b3e6">A</td>
-            <td>R</td>
-            <td bgcolor="#cc4dcc">E</td>
-            <td bgcolor="#cc4dcc">E</td>
-            <td>M</td>
-          </tr>
-          <tr>
-            <td nowrap>ADH_DROHE/5-105&nbsp;&nbsp;</td>
-            <td>A</td>
-            <td bgcolor="#80b3e6">L</td>
-            <td>N</td>
-            <td bgcolor="#cccc00">P</td>
-            <td>.</td>
-            <td>.</td>
-            <td>.</td>
-            <td>.</td>
-            <td>K</td>
-            <td>V</td>
-            <td>T</td>
-            <td bgcolor="#80b3e6">I</td>
-            <td bgcolor="#1acc1a">T</td>
-            <td bgcolor="#80b3e6">F</td>
-            <td bgcolor="#1ab3b3">Y</td>
-            <td bgcolor="#cccc00">P</td>
-            <td bgcolor="#1ab3b3">Y</td>
-            <td bgcolor="#cc4dcc">D</td>
-            <td bgcolor="#80b3e6">V</td>
-            <td bgcolor="#1acc1a">T</td>
-            <td bgcolor="#80b3e6">V</td>
-            <td bgcolor="#cccc00">P</td>
-            <td>L</td>
-            <td>A</td>
-            <td bgcolor="#cc4dcc">E</td>
-            <td>T</td>
-          </tr>
-          <tr>
-            <td nowrap>PGDH_HUMAN/6-106&nbsp;&nbsp;</td>
-            <td>D</td>
-            <td>E</td>
-            <td>Q</td>
-            <td bgcolor="#80b3e6">F</td>
-            <td>E</td>
-            <td bgcolor="#cccc00">P</td>
-            <td>.</td>
-            <td>.</td>
-            <td>.</td>
-            <td>Q</td>
-            <td>K</td>
-            <td bgcolor="#1acc1a">T</td>
-            <td bgcolor="#80b3e6">L</td>
-            <td bgcolor="#80b3e6">F</td>
-            <td bgcolor="#80b3e6">I</td>
-            <td>Q</td>
-            <td bgcolor="#80b3e6">C</td>
-            <td bgcolor="#cc4dcc">D</td>
-            <td bgcolor="#80b3e6">V</td>
-            <td>A</td>
-            <td>D</td>
-            <td>Q</td>
-            <td>Q</td>
-            <td bgcolor="#1acc1a">Q</td>
-            <td>L</td>
-            <td>.</td>
-          </tr>
-          <tr>
-            <td height="5"></td>
-          </tr>
-
-
-        </table>
-  </table>
-
-
-</body>
-</html>