git://source.jalview.org / jalview.git / blobdiff
? search:
summary | shortlog | log | commit | commitdiff | tree
raw | inline | side by side
Updated help pages
[jalview.git] / help / html / features / wrap.html
diff --git a/help/html/features/wrap.html b/help/html/features/wrap.html
new file mode 100755 (executable)
index 0000000..b02df8a
--- /dev/null
+++ b/help/html/features/wrap.html
@@ -0,0 +1,322 @@
+<html>\r
+\r
+</head>\r
+\r
+<body>\r
+<p><strong>Wrap alignment </strong></p>\r
+<p>Use this feature to wrap an alignment to the screen width. </p>\r
+<p>All output (HTML, Printing, JPG etc) will also be in this wrapped format.</p>\r
+<p>This is most useful when looking at alignments with less than 20 sequences. \r
+</p>\r
+<p>Note: No editing is possible when the alignment is in &quot;Wrapped&quot; mode, \r
+  but all other features such as searching, calculations and changing the background \r
+  colour are unaffected.</p>\r
+<table width="480" border="1">\r
+  <tr><td>\r
+\r
+<table border="0"  cellpadding="0" cellspacing="0">\r
+        <tr> \r
+          <td colspan="6">&nbsp;</td>\r
+          <td colspan="9">10<br>\r
+            |</td>\r
+          <td></td>\r
+          <td colspan="9">20<br>\r
+            |</td>\r
+          <td></td>\r
+        </tr>\r
+        <tr> \r
+          <td nowrap>ADHR_DROPS/7-107&nbsp;&nbsp;</td>\r
+          <td bgcolor="#e6331a">K</td>\r
+          <td bgcolor="#1ab3b3">H</td>\r
+          <td bgcolor="#80b3e6">V</td>\r
+          <td bgcolor="#80b3e6">C</td>\r
+          <td bgcolor="#1ab3b3">Y</td>\r
+          <td bgcolor="#80b3e6">V</td>\r
+          <td bgcolor="#80b3e6">A</td>\r
+          <td>D</td>\r
+          <td bgcolor="#80b3e6">C</td>\r
+          <td bgcolor="#e6994d">G</td>\r
+          <td bgcolor="#e6994d">G</td>\r
+          <td bgcolor="#80b3e6">I</td>\r
+          <td>A</td>\r
+          <td bgcolor="#80b3e6">L</td>\r
+          <td>E</td>\r
+          <td bgcolor="#1acc1a">T</td>\r
+          <td bgcolor="#1acc1a">S</td>\r
+          <td bgcolor="#e6331a">K</td>\r
+          <td bgcolor="#80b3e6">V</td>\r
+          <td bgcolor="#80b3e6">L</td>\r
+          <td bgcolor="#80b3e6">M</td>\r
+          <td>T</td>\r
+          <td bgcolor="#e6331a">K</td>\r
+          <td>N</td>\r
+          <td bgcolor="#80b3e6">I</td>\r
+          <td bgcolor="#80b3e6">A</td>\r
+        </tr>\r
+        <tr> \r
+          <td nowrap>ADH_DROHE/5-105&nbsp;&nbsp;</td>\r
+          <td>S</td>\r
+          <td>N</td>\r
+          <td bgcolor="#80b3e6">I</td>\r
+          <td bgcolor="#80b3e6">I</td>\r
+          <td bgcolor="#80b3e6">F</td>\r
+          <td bgcolor="#80b3e6">V</td>\r
+          <td bgcolor="#80b3e6">A</td>\r
+          <td bgcolor="#e6994d">G</td>\r
+          <td bgcolor="#80b3e6">L</td>\r
+          <td bgcolor="#e6994d">G</td>\r
+          <td bgcolor="#e6994d">G</td>\r
+          <td bgcolor="#80b3e6">I</td>\r
+          <td bgcolor="#e6994d">G</td>\r
+          <td bgcolor="#80b3e6">L</td>\r
+          <td bgcolor="#cc4dcc">D</td>\r
+          <td bgcolor="#1acc1a">T</td>\r
+          <td bgcolor="#1acc1a">S</td>\r
+          <td bgcolor="#e6331a">R</td>\r
+          <td>E</td>\r
+          <td bgcolor="#80b3e6">I</td>\r
+          <td bgcolor="#80b3e6">V</td>\r
+          <td>K</td>\r
+          <td>S</td>\r
+          <td bgcolor="#e6994d">G</td>\r
+          <td bgcolor="#cccc00">P</td>\r
+          <td>K</td>\r
+        </tr>\r
+        <tr> \r
+          <td nowrap>PGDH_HUMAN/6-106&nbsp;&nbsp;</td>\r
+          <td bgcolor="#e6331a">K</td>\r
+          <td bgcolor="#80b3e6">V</td>\r
+          <td bgcolor="#80b3e6">A</td>\r
+          <td bgcolor="#80b3e6">L</td>\r
+          <td bgcolor="#80b3e6">V</td>\r
+          <td bgcolor="#1acc1a">T</td>\r
+          <td bgcolor="#e6994d">G</td>\r
+          <td>A</td>\r
+          <td bgcolor="#80b3e6">A</td>\r
+          <td>Q</td>\r
+          <td bgcolor="#e6994d">G</td>\r
+          <td bgcolor="#80b3e6">I</td>\r
+          <td bgcolor="#e6994d">G</td>\r
+          <td>R</td>\r
+          <td>A</td>\r
+          <td>F</td>\r
+          <td>A</td>\r
+          <td bgcolor="#cc4dcc">E</td>\r
+          <td bgcolor="#80b3e6">A</td>\r
+          <td bgcolor="#80b3e6">L</td>\r
+          <td bgcolor="#80b3e6">L</td>\r
+          <td>L</td>\r
+          <td bgcolor="#e6331a">K</td>\r
+          <td bgcolor="#e6994d">G</td>\r
+          <td>.</td>\r
+          <td bgcolor="#80b3e6">A</td>\r
+        </tr>\r
+        <tr>\r
+          <td height="5"></td>\r
+        </tr>\r
+        <tr> \r
+          <td colspan="6">&nbsp;</td>\r
+          <td colspan="9">36<br>\r
+            |</td>\r
+          <td></td>\r
+          <td colspan="9">46<br>\r
+            |</td>\r
+          <td></td>\r
+        </tr>\r
+        <tr> \r
+          <td nowrap>ADHR_DROPS/7-107&nbsp;&nbsp;</td>\r
+          <td bgcolor="#e6331a">K</td>\r
+          <td bgcolor="#80b3e6">L</td>\r
+          <td bgcolor="#80b3e6">A</td>\r
+          <td bgcolor="#80b3e6">I</td>\r
+          <td bgcolor="#80b3e6">L</td>\r
+          <td>Q</td>\r
+          <td>S</td>\r
+          <td bgcolor="#80b3e6">V</td>\r
+          <td>E</td>\r
+          <td bgcolor="#1acc1a">N</td>\r
+          <td bgcolor="#cccc00">P</td>\r
+          <td bgcolor="#cccc00">P</td>\r
+          <td>.</td>\r
+          <td>.</td>\r
+          <td>.</td>\r
+          <td>.</td>\r
+          <td>.</td>\r
+          <td>.</td>\r
+          <td>.</td>\r
+          <td>.</td>\r
+          <td>A</td>\r
+          <td bgcolor="#80b3e6">I</td>\r
+          <td bgcolor="#80b3e6">A</td>\r
+          <td bgcolor="#1acc1a">Q</td>\r
+          <td bgcolor="#80b3e6">L</td>\r
+          <td>Q</td>\r
+        </tr>\r
+        <tr> \r
+          <td nowrap>ADH_DROHE/5-105&nbsp;&nbsp;</td>\r
+          <td>N</td>\r
+          <td bgcolor="#80b3e6">L</td>\r
+          <td bgcolor="#80b3e6">V</td>\r
+          <td bgcolor="#80b3e6">V</td>\r
+          <td bgcolor="#80b3e6">L</td>\r
+          <td bgcolor="#cc4dcc">D</td>\r
+          <td>R</td>\r
+          <td bgcolor="#80b3e6">I</td>\r
+          <td bgcolor="#cc4dcc">D</td>\r
+          <td bgcolor="#1acc1a">N</td>\r
+          <td bgcolor="#cccc00">P</td>\r
+          <td bgcolor="#80b3e6">A</td>\r
+          <td>A</td>\r
+          <td>.</td>\r
+          <td>.</td>\r
+          <td>.</td>\r
+          <td>.</td>\r
+          <td>.</td>\r
+          <td>.</td>\r
+          <td>.</td>\r
+          <td>.</td>\r
+          <td bgcolor="#80b3e6">I</td>\r
+          <td bgcolor="#80b3e6">A</td>\r
+          <td bgcolor="#cc4dcc">E</td>\r
+          <td bgcolor="#80b3e6">L</td>\r
+          <td>K</td>\r
+        </tr>\r
+        <tr> \r
+          <td nowrap>PGDH_HUMAN/6-106&nbsp;&nbsp;</td>\r
+          <td bgcolor="#e6331a">K</td>\r
+          <td bgcolor="#80b3e6">V</td>\r
+          <td bgcolor="#80b3e6">A</td>\r
+          <td bgcolor="#80b3e6">L</td>\r
+          <td bgcolor="#80b3e6">V</td>\r
+          <td bgcolor="#cc4dcc">D</td>\r
+          <td>W</td>\r
+          <td>N</td>\r
+          <td>L</td>\r
+          <td>E</td>\r
+          <td bgcolor="#80b3e6">A</td>\r
+          <td bgcolor="#e6994d">G</td>\r
+          <td>.</td>\r
+          <td>.</td>\r
+          <td>.</td>\r
+          <td>.</td>\r
+          <td>.</td>\r
+          <td>.</td>\r
+          <td>.</td>\r
+          <td>V</td>\r
+          <td>Q</td>\r
+          <td bgcolor="#80b3e6">C</td>\r
+          <td>K</td>\r
+          <td>A</td>\r
+          <td bgcolor="#80b3e6">A</td>\r
+          <td>L</td>\r
+        </tr>\r
+        <tr>\r
+          <td height="5"></td>\r
+        </tr>\r
+        <tr> \r
+          <td colspan="6">&nbsp;</td>\r
+          <td colspan="9">62<br>\r
+            |</td>\r
+          <td></td>\r
+          <td colspan="9">72<br>\r
+            |</td>\r
+          <td></td>\r
+        </tr>\r
+        <tr> \r
+          <td nowrap>ADHR_DROPS/7-107&nbsp;&nbsp;</td>\r
+          <td>S</td>\r
+          <td bgcolor="#80b3e6">I</td>\r
+          <td>K</td>\r
+          <td bgcolor="#1ab3b3">H</td>\r
+          <td>S</td>\r
+          <td>.</td>\r
+          <td>.</td>\r
+          <td>.</td>\r
+          <td>.</td>\r
+          <td>T</td>\r
+          <td>Q</td>\r
+          <td bgcolor="#80b3e6">I</td>\r
+          <td bgcolor="#80b3e6">F</td>\r
+          <td bgcolor="#80b3e6">F</td>\r
+          <td bgcolor="#80b3e6">W</td>\r
+          <td>T</td>\r
+          <td bgcolor="#80b3e6">F</td>\r
+          <td bgcolor="#cc4dcc">D</td>\r
+          <td bgcolor="#80b3e6">V</td>\r
+          <td bgcolor="#1acc1a">T</td>\r
+          <td bgcolor="#80b3e6">M</td>\r
+          <td bgcolor="#80b3e6">A</td>\r
+          <td>R</td>\r
+          <td bgcolor="#cc4dcc">E</td>\r
+          <td bgcolor="#cc4dcc">E</td>\r
+          <td>M</td>\r
+        </tr>\r
+        <tr> \r
+          <td nowrap>ADH_DROHE/5-105&nbsp;&nbsp;</td>\r
+          <td>A</td>\r
+          <td bgcolor="#80b3e6">L</td>\r
+          <td>N</td>\r
+          <td bgcolor="#cccc00">P</td>\r
+          <td>.</td>\r
+          <td>.</td>\r
+          <td>.</td>\r
+          <td>.</td>\r
+          <td>K</td>\r
+          <td>V</td>\r
+          <td>T</td>\r
+          <td bgcolor="#80b3e6">I</td>\r
+          <td bgcolor="#1acc1a">T</td>\r
+          <td bgcolor="#80b3e6">F</td>\r
+          <td bgcolor="#1ab3b3">Y</td>\r
+          <td bgcolor="#cccc00">P</td>\r
+          <td bgcolor="#1ab3b3">Y</td>\r
+          <td bgcolor="#cc4dcc">D</td>\r
+          <td bgcolor="#80b3e6">V</td>\r
+          <td bgcolor="#1acc1a">T</td>\r
+          <td bgcolor="#80b3e6">V</td>\r
+          <td bgcolor="#cccc00">P</td>\r
+          <td>L</td>\r
+          <td>A</td>\r
+          <td bgcolor="#cc4dcc">E</td>\r
+          <td>T</td>\r
+        </tr>\r
+        <tr> \r
+          <td nowrap>PGDH_HUMAN/6-106&nbsp;&nbsp;</td>\r
+          <td>D</td>\r
+          <td>E</td>\r
+          <td>Q</td>\r
+          <td bgcolor="#80b3e6">F</td>\r
+          <td>E</td>\r
+          <td bgcolor="#cccc00">P</td>\r
+          <td>.</td>\r
+          <td>.</td>\r
+          <td>.</td>\r
+          <td>Q</td>\r
+          <td>K</td>\r
+          <td bgcolor="#1acc1a">T</td>\r
+          <td bgcolor="#80b3e6">L</td>\r
+          <td bgcolor="#80b3e6">F</td>\r
+          <td bgcolor="#80b3e6">I</td>\r
+          <td>Q</td>\r
+          <td bgcolor="#80b3e6">C</td>\r
+          <td bgcolor="#cc4dcc">D</td>\r
+          <td bgcolor="#80b3e6">V</td>\r
+          <td>A</td>\r
+          <td>D</td>\r
+          <td>Q</td>\r
+          <td>Q</td>\r
+          <td bgcolor="#1acc1a">Q</td>\r
+          <td>L</td>\r
+          <td>.</td>\r
+        </tr>\r
+        <tr>\r
+          <td height="5"></td>\r
+        </tr>\r
+\r
+\r
+      </table>\r
+</table>\r
+\r
+\r
+</body>\r
+</html>\r