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- * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
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-<head>
-<title>Key Strokes</title>
-</head>
-<body>
- <p>
- <strong>Key Strokes</strong>
- </p>
- <p>
- Jalview has two distinct modes of keyboard operation - in 'Normal'
- mode, single keystrokes (including those shown next to menu items)
- provide short cuts to common commands. In <a
- href="features/cursorMode.html">'Cursor'</a> mode (enabled by
- <em>F2</em>), some of these are disabled and more complex 'Compound
- Keystrokes' can be entered to perform precise navigation, selection
- and editing operations.
- </p>
- <table border="1">
- <tr>
- <td><strong>Key</strong></td>
- <td><strong>Which Mode</strong></td>
- <td><strong>Action</strong></td>
- </tr>
- <!--<tr>
-<td><strong>Escape</strong></td><td>Both</td>
-<td>The Panic button.</td></tr>
-<tr> -->
- <tr>
- <td><strong> Escape</strong></td>
- <td>Normal</td>
- <td>Clears the current selection region, highlighted columns
- and highlghted residues.</td>
- </tr>
- <tr>
- <td><strong>Escape</strong></td>
- <td>Cursor</td>
- <td>As in normal mode, but also cancels any partially entered
- commands</td>
- </tr>
- <tr>
- <td><strong><em>F1</em></strong></td>
- <td>Both</td>
- <td>Show Help Documentation</td>
- </tr>
- <tr>
- <td><strong><em>F2</em></strong></td>
- <td></td>
- <td>Toggle Cursor mode on / off</td>
- </tr>
- <tr>
- <td><strong>Control 'Z'</strong></td>
- <td>Both</td>
- <td>Undoes the last sequence edit</td>
- </tr>
- <tr>
- <td><strong>Control 'Y'</strong></td>
- <td>Both</td>
- <td>Redo the last sequence edit undone.</td>
- </tr>
- <tr>
- <td><strong>Up Arrow</strong></td>
- <td>Normal</td>
- <td>Moves selected sequence(s) up the alignment</td>
- </tr>
- <tr>
- <td><strong>Down Arrow</strong></td>
- <td>Normal</td>
- <td>Moves selected sequence(s) down the alignment.</td>
- </tr>
- <tr>
- <td><strong>Left Arrow</strong></td>
- <td>Normal</td>
- <td>Slides selected sequence(s) left. Press Alt key to slide
- in cursor mode</td>
- </tr>
- <tr>
- <td><strong>Right Arrow</strong></td>
- <td>Normal</td>
- <td>Slides selected sequence(s) right. Press Alt key to slide
- in cursor mode</td>
- </tr>
- <tr>
- <td><strong>Cursor Keys<br> (Arrow Keys)
- </strong></td>
- <td>Cursor</td>
- <td>Move cursor around alignment</td>
- </tr>
- <tr>
- <td><strong>Page Up</strong></td>
- <td>Both</td>
- <td>Scroll up the alignment view</td>
- </tr>
- <tr>
- <td><strong>Page Down</strong></td>
- <td>Both</td>
- <td>Scroll down the alignment view</td>
- </tr>
- <tr>
- <td><strong>Control 'A'</strong></td>
- <td>Both</td>
- <td>Selects all sequences in the alignment</td>
- </tr>
- <tr>
- <td><strong>Control 'I'</strong></td>
- <td>Both</td>
- <td>Invert sequence selection.</td>
- </tr>
- <tr>
- <td><strong>Control Alt 'I'</strong></td>
- <td>Both</td>
- <td>Invert column selection.</td>
- </tr>
- <tr>
- <td><strong>Control 'C'</strong></td>
- <td>Both</td>
- <td>Copies the selected region into the clipboard as a Fasta
- format file<br> <em>nb. not available in applet, as no
- clipboard is available</em>
- </td>
- </tr>
- <tr>
- <td><strong>Control 'V'</strong></td>
- <td>Both</td>
- <td>Paste the contents of the clipboard to the current
- alignment window. (Alignment Window->Edit->Paste->Add to this
- Alignment)<br> <em>nb. if the paste is from a Jalview
- alignment, any sequence and alignment annotations will also be
- copied over.</em>
- </td>
- </tr>
- <tr>
- <td><strong>Control Shift 'V'</strong></td>
- <td>Both</td>
- <td>Paste the contents of the clipboard to a new alignment
- window. (Alignment Window->Edit->Paste->To New Alignment)</td>
- </tr>
- <tr>
- <td><strong>Control 'X'</strong></td>
- <td>Both</td>
- <td>Cuts the (fully) selected sequences from the alignment. <!-- not yet in this version
-This will not happen if only some
-columns are selected, you should use the <a href="features/hiddenRegions.html">Hide Regions feature</a> instead.-->
- </td>
- </tr>
- <tr>
- <td><strong>Control 'F'</strong></td>
- <td>Both</td>
- <td>Launches the search window</td>
- </tr>
- <tr><td><strong>B</strong></td>
- <td>Both</td>
- <td>Add highlighted columns to current column selection</td>
- </tr>
- <tr><td><strong>Alt 'B'</strong></td>
- <td>Both</td>
- <td>Add all but the currently highlighted columns to current selection</td>
- </tr>
- <tr><td><strong>Control 'B'</strong></td>
- <td>Both</td>
- <td>Toggle the column selection marks for the currently highlighted
- columns (or all others if Alt is also pressed)</td>
- </tr>
- <tr>
- <td><strong>H</strong></td>
- <td>Both</td>
- <td>Hides / Reveals selected columns and sequences</td>
- </tr>
- <tr>
- <td><strong>Control 'H'</strong></td>
- <td>Both</td>
- <td>Hides / Reveals selected columns</td>
- </tr>
- <tr>
- <td><strong>Shift 'H'</strong></td>
- <td>Both</td>
- <td>Hides / Reveals selected sequences</td>
- </tr>
- <tr>
- <td><strong>Control + Shift 'H'</strong></td>
- <td>Both</td>
- <td>Hides everything but the current selection</td>
- </tr>
- <tr>
- <td><strong>Control 'O'</strong></td>
- <td>Both</td>
- <td>Input new alignment from file</td>
- </tr>
- <tr>
- <td><strong>Control 'S'</strong></td>
- <td>Both</td>
- <td>Save alignment with current filename and format</td>
- </tr>
- <tr>
- <td><strong>Control Shift 'S'</strong></td>
- <td>Both</td>
- <td>Save alignment as a new file or with a different format</td>
- </tr>
- <tr>
- <td><strong>Control 'P'</strong></td>
- <td>Both</td>
- <td>Opens the print dialog box to print the current view</td>
- </tr>
- <tr>
- <td><strong>Control 'W'</strong></td>
- <td>Both</td>
- <td>Closes the current view or the current alignment</td>
- </tr>
- <tr>
- <td><strong>Backspace</strong></td>
- <td>Normal</td>
- <td>Delete the currently selected rows or columns from the
- alignment.</td>
- </tr>
- <tr>
- <td><strong>Control 'L'</strong></td>
- <td>Left</td>
- <td>Remove columns to left of left-most column marker.</td>
- </tr>
- <tr>
- <td><strong>Control 'R'</strong></td>
- <td>Both</td>
- <td>Remove columns to right of right-most column marker.</td>
- </tr>
- <tr>
- <td><strong>Control 'E'</strong></td>
- <td>Both</td>
- <td>Remove gapped columns</td>
- </tr>
- <tr>
- <td><strong>Control Shift 'E'</strong></td>
- <td>Both</td>
- <td>Remove all gaps</td>
- </tr>
- <tr>
- <td><strong>Control 'D'</strong></td>
- <td>Both</td>
- <td>Open the 'Remove redundancy' Dialog box.</td>
- </tr>
- <tr>
- <td><strong></strong></td>
- <td>Normal</td>
- <td></td>
- </tr>
- </table>
- <p>The compound commands available in the Cursor mode are
- summarised below. Single letter commands can be prefixed by digits
- to specify a repetition number, and some more complex commands take
- one or more numeric parameters (prefixing the command key and
- separated by commas).</p>
- <table border=1>
- <tr>
- <td><strong>Compound Command</strong></td>
- <td>Mode</td>
- <td>Action (and parameter description)</td>
- </tr>
- <tr>
- <td><strong>0-9</strong></td>
- <td>Cursor</td>
- <td>Begin entering a numeric parameter (<strong><em>p</em></strong>)
- or repetition number for a cursor movement or edit command.
- </td>
- </tr>
- <tr>
- <td><strong>,</strong></td>
- <td>Cursor</td>
- <td>Separates one or more numeric parameters (<em>e.g. <strong>p1</strong>,<strong>p2</strong></em>)
- for a command.
- </td>
- </tr>
- <tr>
- <td><strong><strong><em>p1</em></strong>,<strong><em>p2</em></strong><br>Return</strong></td>
- <td>Cursor</td>
- <td>Move cursor to a particular column (<strong><em>p1</em></strong>)
- and row (<strong><em>p2</em></strong>) in the alignment.<br>
- <em>e.g. '5,6<Return>' moves the cursor to the 5th
- column in the 6th sequence.</em></td>
- </tr>
- <tr>
- <td><strong><em>p</em>S</strong></td>
- <td>Cursor</td>
- <td>Jump to the <strong><em>p</em></strong>'th sequence in
- the alignment.
- </td>
- </tr>
- <tr>
- <td><strong><em>p</em>P</strong></td>
- <td>Cursor</td>
- <td>Jump to <em><strong>p</strong></em>'th amino acid in
- current sequence.
- </td>
- </tr>
- <tr>
- <td><strong><em>p</em>C</strong></td>
- <td>Cursor</td>
- <td>Jump to <em><strong>p</strong></em>'th column in the
- alignment.
- </td>
- </tr>
- <tr>
- <td><strong>Q</strong></td>
- <td>Cursor</td>
- <td>Marks the top left corner of the selection area</td>
- </tr>
- <tr>
- <td><strong>M</strong></td>
- <td>Cursor</td>
- <td>Marks the bottom right corner of the selection area</td>
- </tr>
- <tr>
- <td><strong><em>[p]</em><br>Space</strong></td>
- <td>Cursor</td>
- <td>Inserts one (or optionally <strong><em>p</em></strong>)
- gaps at the current position.<br> <em>Hold down
- Control or Shift to insert gaps over a sequence group</em></td>
- </tr>
- <tr>
- <td><strong><em>[p]</em><br>Delete<br></strong></td>
- <td>Cursor</td>
- <td>Removes one (or optionally <strong><em>p</em></strong>)
- gaps at the cursor position.<br> <em>Hold down Control
- or Shift to insert gaps over a sequence group</em></td>
- </tr>
- <tr>
- <td><strong><em>[p]</em><br>Backspace<br></strong></td>
- <td>Cursor</td>
- <td>Removes one (or optionally <strong><em>p</em></strong>)
- gaps at the cursor position.<br> <em>Hold down Control
- or Shift to insert gaps over a sequence group</em></td>
- </tr>
- </table>
- <p> </p>
- <p> </p>
-</body>
-</html>
git://source.jalview.org / jalview.git / blobdiff