JAL-3035 remove DAS UI documentation

[jalview.git] / help / html / menus / alignmentMenu.html

diff --git a/help/html/menus/alignmentMenu.html b/help/html/menus/alignmentMenu.html
index 00a2ec4..f3ab75d 100755 (executable)
--- a/help/html/menus/alignmentMenu.html
+++ b/help/html/menus/alignmentMenu.html
@@ -314,9 +314,7 @@
             href="../features/featuresettings.html">Sequence
               Feature Settings...</a> </strong><br> <em>Opens the
               Sequence Feature Settings dialog box to control the colour
-              and display of sequence features on the alignment, and
-              configure and retrieve features from DAS annotation
-              servers.</em></li>
+              and display of sequence features on the alignment.</em></li>
         <li><strong>Sequence ID Tooltip</strong><em>
             (application only) <br>This submenu's options allow the
             inclusion or exclusion of non-positional sequence features
@@ -579,28 +577,26 @@
       is dynamic, and may contain user-defined web service entries in
       addition to any of the following ones:</em>
     <ul>
-      <li><strong>Fetch DB References</strong><br> <em>This
-          submenu contains options for accessing any of the database
-          services that Jalview is aware of (e.g. DAS sequence servers
-          and the WSDBFetch service provided by the EBI) to verify
-          sequence start/end positions and retrieve all database cross
-          references and PDB ids associated with all or just the
-          selected sequences in the alignment.
-          <ul>
-            <li>'Trim Retrieved Sequences' - when checked, Jalview
-              will discard any additional sequence data for accessions
-              associated with sequences in the alignment. <br> <strong>Note:
-                Disabling this could cause out of memory errors when
-                working with genomic sequence records !</strong><br> <strong>Added
-                in Jalview 2.8.1</strong>
-            </li>
-            <li>'Standard Databases' will check sequences against
-              the EBI databases plus any active DAS sequence sources</li>
-          </ul> Other sub-menus allow you to pick a specific source to query
-          - sources are listed alphabetically according to their
-          nickname.
-      </em><br></li>
-    </ul>
+                               <li><strong>Fetch DB References</strong><br> <em>This
+                                               submenu contains options for accessing any of the database
+                                               services that Jalview is aware of (e.g. those provided by
+                                               EMBL-EBI) to verify sequence start/end positions and retrieve all
+                                               database cross references and PDB ids associated with all or just
+                                               the selected sequences in the alignment.
+                                               <ul>
+                                                       <li>'Trim Retrieved Sequences' - when checked, Jalview will
+                                                               discard any additional sequence data for accessions associated
+                                                               with sequences in the alignment. <br> <strong>Note:
+                                                                       Disabling this could cause out of memory errors when working
+                                                                       with genomic sequence records !</strong><br> <strong>Added
+                                                                       in Jalview 2.8.1</strong>
+                                                       </li>
+                                                       <li>'Standard Databases' will check sequences against the
+                                                               EBI databases.</li>
+                                               </ul> Other sub-menus allow you to pick a specific source to query -
+                                               sources are listed alphabetically according to their nickname.
+                               </em><br></li>
+                       </ul>
     <p>Selecting items from the following submenus will start a
       remote service on compute facilities at the University of Dundee,
       or elsewhere. You need a continuous network connection in order to