'Help files updated with RNA stuff' merge; JAL-580

[jalview.git] / help / html / menus / alwcolour.html

diff --git a/help/html/menus/alwcolour.html b/help/html/menus/alwcolour.html
index 10ec9c7..fa66701 100755 (executable)
--- a/help/html/menus/alwcolour.html
+++ b/help/html/menus/alwcolour.html
@@ -31,7 +31,7 @@
       </em></li>
     <li>Colour Scheme options: <strong>None, ClustalX, Blosum62 Score, Percentage 
       Identity, Zappo, Taylor, Hydrophobicity, Helix Propensity, Strand Propensity, 
-      Turn Propensity, Buried Index, Nucleotide, User Defined<br>
+      Turn Propensity, Buried Index, Nucleotide, Purine/Pyrimidine, User Defined<br>
       </strong> <em>See <a href="../colourSchemes/index.html">colours</a> for 
       a description of all colour schemes.</em><br>
     </li>
@@ -56,6 +56,11 @@
       <em>Colours the alignment on a per-column value from a specified annotation. 
       See <a href="../colourSchemes/annotationColouring.html">Annotation Colouring</a>.</em><br>
     </li>
+    <li><strong>By RNA Helices</strong><br>
+               <em>Colours the helices of an RNA alignment loaded from a Stockholm file. See 
+               <a href="../colourSchemes/rnahelicesColouring.html">RNA Helices
+               Colouring</a>.</em><br>
+               </li>
   </ul>
 </body>
 </html>