JAL-1477 documentation and tooltips

[jalview.git] / help / html / menus / popupMenu.html

diff --git a/help/html/menus/popupMenu.html b/help/html/menus/popupMenu.html
index 6ceccee..71b2603 100755 (executable)
--- a/help/html/menus/popupMenu.html
+++ b/help/html/menus/popupMenu.html
@@ -148,11 +148,11 @@ not be accessible when in 'Cursor Mode' (toggled with the F2 key).</em></p>
           <li><strong>From File<br>
             </strong><em>Load a PDB file from local disk which will be associated 
             with this sequence. This file will be used if the user subsequently 
-            clicks on &quot;View PDB Structure&quot; menu item.</em></li>
+            clicks on &quot;View Structure&quot; menu item.</em></li>
           <li><strong>Enter PDB id<br>
             </strong><em>Enter the PDB id from an input window. This PDB id will 
             be used by the service WSDBFetch, provided by the EBI, to fetch the 
-            PDB file if the user subsequently clicks on &quot;View PDB Structure&quot; 
+            PDB file if the user subsequently clicks on its &quot;View Structure&quot; 
             menu item. </em></li>
           <li><strong>Discover PDB ids<br>
             </strong><em>This will use the service WSDBFetch, provided by the 
@@ -169,6 +169,24 @@ not be accessible when in 'Cursor Mode' (toggled with the F2 key).</em></p>
                        href="../features/viewingpdbs.html">associated PDB structures</a>.<br/>
                        If the sequence or alignment has RNA structure, then <strong>2D RNA</strong> entries will also be present enabling you to open a linked view of the RNA structure in <a href="../features/varna.html">VARNA</a>.</em><br>
       </li>
+      <p><em>Other menu entries may also be shown if the current selection includes sequences with associated structure data:</em><br>
+  <ul>
+    <li><strong>&quot;Structure&#8594;View all <em>N</em>
+        structures<br/>
+    </strong><em>Opens a new window containing all structures associated
+      with the current selection, superposed according to the currently selected region of the alignment.<br/>(This
+      capability was added in Jalview 2.7)</em>
+    </li>
+    <li><strong>&quot;Structure&#8594;View all <em>N</em>
+        representative structures<br/>
+    </strong><em>Open a new window containing exactly one structure per
+      currently selected sequence.<br />
+    (The View representative structures option was introduced in
+        Jalview 2.8.1)</em></li>
+  </ul>
+  <br> <li>
+      
+      </li>
     </ul>
   </li>
   <li><strong>Hide Sequences</strong><br>