JAL-3224 JAL-3225 Fixed help image mangling, moved help to help/help and added this...
[jalview.git] / help / html / misc / aminoAcids.html
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-<html>
-<!--
- * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
- * Copyright (C) $$Year-Rel$$ The Jalview Authors
- * 
- * This file is part of Jalview.
- * 
- * Jalview is free software: you can redistribute it and/or
- * modify it under the terms of the GNU General Public License 
- * as published by the Free Software Foundation, either version 3
- * of the License, or (at your option) any later version.
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- * Jalview is distributed in the hope that it will be useful, but 
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- * PURPOSE.  See the GNU General Public License for more details.
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- * The Jalview Authors are detailed in the 'AUTHORS' file.
- -->
-<head>
-<title>Amino Acids</title>
-<style type="text/css">
-<!--
-td {
-       text-align: center;
-       background-color: FFFFEE;
-}
--->
-</style>
-</head>
-
-<body>
-
-
-  <div align="center">
-    <table width="450" BORDER="1" cellpadding="3" BGCOLOR="#FFFFFF">
-      <tr>
-        <td width="15">A</td>
-        <td width="25">Ala</td>
-        <td width="90">Alanine</td>
-        <td width="80">aliphatic<br> hydrophobic<br>
-          neutral
-        </td>
-        <td width="43" valign="middle">GCT<br> GCC<br>
-          GCA<br> GCG
-        </td>
-        <td width="125"><img src="ala.jpg" width="94" height="81"></td>
-      </tr>
-      <tr>
-        <td>B</td>
-        <td>&nbsp;</td>
-        <td>either aspartic acid or asparagine</td>
-        <td>&nbsp;</td>
-        <td>&nbsp;</td>
-        <td>&nbsp;</td>
-      </tr>
-      <tr>
-        <td>C</td>
-        <td>Cys</td>
-        <td>Cysteine</td>
-        <td>polar<br> hydrophobic<br> neutral
-        </td>
-        <td>TGT<br> TGC
-        </td>
-        <td><img src="cys.jpg" width="82" height="95"></td>
-      </tr>
-      <tr>
-        <td>D</td>
-        <td>Asp</td>
-        <td>Aspartic Acid</td>
-        <td>polar<br> hydrophilic<br> charged (-)
-        </td>
-        <td>GAT<br> GAC
-        </td>
-        <td><img src="aspartate.jpg" width="95" height="103"></td>
-      </tr>
-      <tr>
-        <td>E</td>
-        <td>Glu</td>
-        <td>Glutamic Acid</td>
-        <td>polar<br> hydrophilic<br> charged (-)
-        </td>
-        <td>GAA<br> GAG
-        </td>
-        <td><img src="glutamate.jpg" width="93" height="128"></td>
-      </tr>
-      <tr>
-        <td>F</td>
-        <td>Phe</td>
-        <td>Phenylalanine</td>
-        <td>aromatic<br> hydrophobic<br> neutral
-        </td>
-        <td>TTT<br> TTC
-        </td>
-        <td><img src="phe.jpg" width="87" height="134"></td>
-      </tr>
-      <tr>
-        <td>G</td>
-        <td>Gly</td>
-        <td>Glycine</td>
-        <td>&nbsp;</td>
-        <td>GGT<br> GGC<br> GGA<br> GGG
-        </td>
-        <td><img src="gly.jpg" width="97" height="79"></td>
-      </tr>
-      <tr>
-        <td>H</td>
-        <td>His</td>
-        <td>Histidine</td>
-        <td>aromatic<br> polar<br> hydrophilic<br>
-          charged (+)
-        </td>
-        <td>CAT<br> CAC
-        </td>
-        <td><img src="his.jpg" width="97" height="142"></td>
-      </tr>
-      <tr>
-        <td>I</td>
-        <td>Ile</td>
-        <td>Isoleucine</td>
-        <td>aliphatic<br> hydrophobic<br> neutral
-        </td>
-        <td>ATT<br> ATC<br> ATA
-        </td>
-        <td><img src="iso.jpg" width="101" height="125"></td>
-      </tr>
-      <tr>
-        <td>K</td>
-        <td>Lys</td>
-        <td>Lysine</td>
-        <td>&nbsp;</td>
-        <td>AAA<br> AAG
-        </td>
-        <td><img src="lys.jpg" width="79" height="167"></td>
-      </tr>
-      <tr>
-        <td>L</td>
-        <td>Leu</td>
-        <td>Leucine</td>
-        <td>aliphatic<br> hydrophobic<br> neutral
-        </td>
-        <td>TTG<br> TTA<br> CTT<br> CTC<br> CTA<br>
-          CTG
-        </td>
-        <td><img src="leu.jpg" width="97" height="120"></td>
-      </tr>
-      <tr>
-        <td>M</td>
-        <td>Met</td>
-        <td>Methionine</td>
-        <td>hydrophobic<br> neutral
-        </td>
-        <td>ATG</td>
-        <td><img src="met.jpg" width="86" height="151"></td>
-      </tr>
-      <tr>
-        <td>N</td>
-        <td>Asn</td>
-        <td>Asparagine</td>
-        <td>polar<br> hydrophilic<br> neutral
-        </td>
-        <td>AAT<br> AAC
-        </td>
-        <td><img src="asparagine.jpg" width="84" height="116"></td>
-      </tr>
-      <tr>
-        <td>P</td>
-        <td>Pro</td>
-        <td>Proline</td>
-        <td>hydrophobic<br> neutral
-        </td>
-        <td>CCT<br> CCC<br> CCA<br> CCG
-        </td>
-        <td><img src="pro.jpg" width="101" height="90"></td>
-      </tr>
-      <tr>
-        <td>Q</td>
-        <td>Gln</td>
-        <td>Glutamine</td>
-        <td>polar<br> hydrophilic<br> neutral
-        </td>
-        <td>CAA<br> CAG
-        </td>
-        <td><img src="glutamine.jpg" width="81" height="137"></td>
-      </tr>
-      <tr>
-        <td>R</td>
-        <td>Arg</td>
-        <td>Arginine</td>
-        <td>polar<br> hydrophilic<br> charged (+)
-        </td>
-        <td>CGT<br> CGC<br> CGA<br> CGG<br> AGA<br>
-          AGG
-        </td>
-        <td><img src="arg.jpg" width="95" height="187"></td>
-      </tr>
-      <tr>
-        <td>S</td>
-        <td>Ser</td>
-        <td>Serine</td>
-        <td>polar<br> hydrophilic<br> neutral
-        </td>
-        <td>TCT<br> TCC<br> TCA<br> TCG<br> AGT<br>
-          AGC
-        </td>
-        <td><img src="ser.jpg" width="96" height="74"></td>
-      </tr>
-      <tr>
-        <td>T</td>
-        <td>Thr</td>
-        <td>Threonine</td>
-        <td>polar<br> hydrophilic<br> neutral
-        </td>
-        <td>ACT<br> ACC<br> ACA<br> ACG
-        </td>
-        <td><img src="thr.jpg" width="94" height="96"></td>
-      </tr>
-      <tr>
-        <td>V</td>
-        <td>Val</td>
-        <td>Valine</td>
-        <td>aliphatic<br> hydrophobic<br> neutral
-        </td>
-        <td>GTT<br> GTC<br> GTA<br> GTG
-        </td>
-        <td><img src="val.jpg" width="99" height="98"></td>
-      </tr>
-      <tr>
-        <td>W</td>
-        <td>Trp</td>
-        <td>Tryptophan</td>
-        <td>aromatic<br> hydrophobic<br> neutral
-        </td>
-        <td>TGG</td>
-        <td><img src="tryp.jpg" width="106" height="173"></td>
-      </tr>
-      <tr>
-        <td>X</td>
-        <td>&nbsp;</td>
-        <td>UNKNOWN</td>
-        <td>&nbsp;</td>
-        <td>&nbsp;</td>
-        <td>&nbsp;</td>
-      </tr>
-      <tr>
-        <td>Y</td>
-        <td>Tyr</td>
-        <td>Tyrosine</td>
-        <td>aromatic<br> polar<br> hydrophobic
-        </td>
-        <td>TAT<br> TAC
-        </td>
-        <td><img src="tyr.jpg" width="85" height="152"></td>
-      </tr>
-      <tr>
-        <td>Z</td>
-        <td>&nbsp;</td>
-        <td>either glutamic acid or glutamine</td>
-        <td>&nbsp;</td>
-        <td>&nbsp;</td>
-        <td>&nbsp;</td>
-      </tr>
-      <tr>
-        <td>&nbsp;</td>
-        <td>End</td>
-        <td>Terminator</td>
-        <td>&nbsp;</td>
-        <td>TAA<br> TAG<br> TGA
-        </td>
-        <td>&nbsp;</td>
-      </tr>
-    </table>
-  </div>
-</body>
-</html>