Merge branch 'documentation/JAL-2418_release2102' into develop

[jalview.git] / help / html / releases.html

diff --git a/help/html/releases.html b/help/html/releases.html
index 18f8f43..b8bcfc7 100755 (executable)
--- a/help/html/releases.html
+++ b/help/html/releases.html
@@ -81,6 +81,7 @@ li:before {
           <li><!--  JAL-384 -->Custom shading schemes created via groovy scripts</li>
           <li><!--  JAL-2491 -->linked scrolling of CDS/Protein views via Overview or sequence motif search operations</li>
           <li><!--  JAL-2526 -->Efficiency improvements for interacting with alignment and overview windows</li>
+          <li><!-- JAL-2388 -->Hidden columns and sequences can be omitted in Overview</li>
             <li>
               <!-- JAL-2535 -->Posterior probability annotation from
               Stockholm files imported as sequence associated annotation
@@ -116,7 +117,7 @@ li:before {
           <li><!--  --></li>
           </ul>
           <em>Test Suite</em>
-          <li><!--  JAL-2474 -->Added PrivelegedAccessor to test suite</li>
+          <li><!--  JAL-2474 -->Added PrivilegedAccessor to test suite</li>
           <li><!-- JAL-2326 -->Prevent or clear modal dialogs raised during tests</li>
           <li><!--  -->  
           </ul>
@@ -126,7 +127,7 @@ li:before {
             <li>
               <!-- JAL-2398, -->Fixed incorrect value in BLOSUM 62 score
               matrix - C->R should be '3'<br />Old matrix restored with
-              this one-line groovy script:<br />jalview.schemes.ResidueProperties.BLOSUM62[4][1]=3
+              this one-line groovy script:<br />jalview.analysis.scoremodels.ScoreModels.instance.BLOSUM62.@matrix[4][1]=3
             </li>
             <li>
               <!-- JAL-2397 -->Fixed Jalview's treatment of gaps in PCA
@@ -159,7 +160,8 @@ li:before {
           <li><!-- JAL-2385 -->Colour threshold slider doesn't update to reflect currently selected view or group's shading thresholds</li>
           <li><!-- JAL-2373 -->Percentage identity and conservation menu items do not show a tick or allow shading to be disabled</li>
           <li><!-- JAL-2385 -->Conservation shading or PID threshold lost when base colourscheme changed if slider not visible</li>
-          <li><!-- JAL-2547 -->Sequence features shown in tooltip for gaps before start of features</li> 
+          <li><!-- JAL-2547 -->Sequence features shown in tooltip for gaps before start of features</li>
+          <li><!-- JAL-2563 -->Sequence position for ambiguous codon not shown in status bar</li> 
           </ul>
           <em>Application</em>
           <ul>