JAL-2039 release notes

[jalview.git] / help / html / releases.html

diff --git a/help/html/releases.html b/help/html/releases.html
index f29f708..9531840 100755 (executable)
--- a/help/html/releases.html
+++ b/help/html/releases.html
@@ -47,12 +47,35 @@
     <tr>
       <td width="60" nowrap>
         <div align="center">
-          <strong><a name="Jalview.2.10.0">2.10.0</a><br /> <em>04/10/2016</em></strong>
+          <strong><a name="Jalview.2.9.0b2">2.10.0b1</a><br />
+            <em>18/10/2016</em></strong>
+        </div>
+      </td>
+      <td><em>Application</em>
+        <ul>
+          <li>3D Structure chooser opens with 'Cached structures' view if structures already loaded</li>
+        </ul></td>
+      <td>
+        <div align="left">
+          <em>Application</em>
+          <ul>
+            <li>ENA client ignores invalid content from ENA server</li>
+          </ul>
+        </div>
+      </td>
+    </tr>
+    <tr>
+      <td width="60" nowrap>
+        <div align="center">
+          <strong><a name="Jalview.2.10.0">2.10.0</a><br /> <em>06/10/2016</em></strong>
         </div>
       </td>
       <td><em>General</em>
         <ul>
           <li>
+          <!-- JAL-2124 -->Updated Spanish translations.
+          </li> 
+          <li>
             <!-- JAL-2164,JAL-1919,JAL-2148 -->Jmol now primary parser
             for importing structure data to Jalview. Enables mmCIF and
             better PDB parsing.
@@ -204,19 +227,21 @@
             sequences
           </li>
           <li>
-            <!-- JAL- -->
+            <!-- JAL-2213,JAL-1856 -->Improved warning messages when DB
+            Ref Fetcher fails to match, or otherwise updates sequence
+            data from external database records.
           </li>
           <li>
-            <!-- JAL- -->
+            <!-- JAL-2154 -->Revised Jalview Project format for
+            efficient recovery of sequence coding and alignment
+            annotation relationships.
           </li>
-
-
-        </ul> <em>Applet</em>
+        </ul> <!-- <em>Applet</em>
         <ul>
           <li>
-            <!-- JAL--->
+            -- JAL---
           </li>
-        </ul></td>
+        </ul> --></td>
       <td>
         <div align="left">
           <em>General</em>
@@ -338,28 +363,21 @@
               <!-- JAL-1306 -->Quality and Conservation are now shown on
               load even when Consensus calculation is disabled
             </li>
-            <li>
-              <!--  -->
-            </li>
-            <li>
-              <!-- JAL- -->
-            </li>
-            <li>
-              <!-- JAL- -->
-            </li>
           </ul>
           <em>Application</em>
           <ul>
             <li>
-              <!-- JAL-1944 not yet fixed Error thrown when exporting a view with hidden sequences as flat-file alignment-->
+              <!-- JAL-1552-->URLs and links can't be imported by
+              drag'n'drop on OSX when launched via webstart (note - not
+              yet fixed for El Capitan)
             </li>
             <li>
               <!-- JAL-1911-->Corrupt preferences for SVG, EPS & HTML
               output when running on non-gb/us i18n platforms
             </li>
             <li>
-              <!-- JAL-1552-->URLs and links can imported by drag'n'drop
-              on OSX webstart
+              <!-- JAL-1944 -->Error thrown when exporting a view with
+              hidden sequences as flat-file alignment
             </li>
             <li>
               <!-- JAL-2030-->InstallAnywhere distribution fails when
@@ -430,7 +448,7 @@
             </li>
             <li>
               <!-- JAL-2036 -->Enable 'Get Cross-References' in menu
-              after fetching cross-references
+              after fetching cross-references, and restoring from project
             </li>
             <li>
               <!-- JAL-2032 -->Mouseover of a copy of a sequence is not
@@ -456,7 +474,7 @@
             </li>
             <li>
               <!-- JAL-1960 -->Only offer PDB structures in structure
-              viewer based on sequence name, PDB and Uniprot
+              viewer based on sequence name, PDB and UniProt
               cross-references
             </li>
 
@@ -465,11 +483,6 @@
               alignment as HTML
             </li>
             <li>
-              <!-- JAL-2213,JAL-1856 -->Improved warning messages when
-              DB Ref Fetcher fails to match, or otherwise updates
-              sequence data from external database records.
-            </li>
-            <li>
               <!-- JAL-2213 -->Structures not always superimposed after
               multiple structures are shown for one or more sequences.
             </li>
@@ -496,14 +509,8 @@
               <!-- JAL-1887 -->Incorrect start and end reported for PDB
               to sequence mapping in 'View Mappings' report
             </li>
-            <li>
-              <!-- JAL- -->
-            </li>
-            <li>
-              <!-- JAL- -->
-            </li>
-
-            <!--  may exclude, this is an external service stability issue  JAL-1941 /> RNA 3D structure not added via DSSR service</li> -->
+            <!--  may exclude, this is an external service stability issue  JAL-1941 
+            -- > RNA 3D structure not added via DSSR service</li> -->
           </ul>
           <em>Applet</em>
           <ul>
@@ -1800,6 +1807,9 @@
             regular-expression based URL links (applet and application)
 
 
+
+
+
           
           <li>Non-positional feature URL links are shown in link
             menu</li>
@@ -2254,6 +2264,9 @@
           <li>User-defined sub-tree colours and sub-tree selection
 
 
+
+
+
           
           <li>'New Window' button on the 'Output to Text box'
         </ul>
@@ -2270,6 +2283,9 @@
           <li>Slowed DAS Feature Fetching for increased robustness.
 
 
+
+
+
           
           <li>Made angle brackets in ASCII feature descriptions
             display correctly
@@ -2283,6 +2299,9 @@
           <li>Smooth fonts switch moved to FontChooser dialog box.
 
 
+
+
+
           
         </ul>
       </td>