<tr>
<td width="60" nowrap>
<div align="center">
- <strong><a name="Jalview.2.10.0">2.10.0</a><br /> <em>04/10/2016</em></strong>
+ <strong><a name="Jalview.2.10.0b1">2.10.0b1</a><br />
+ <em>25/10/2016</em></strong>
+ </div>
+ </td>
+ <td><em>Application</em>
+ <ul>
+ <li>3D Structure chooser opens with 'Cached structures'
+ view if structures already loaded</li>
+ <li>Progress bar reports models as they are loaded to
+ structure views</li>
+ </ul></td>
+ <td>
+ <div align="left">
+ <em>General</em>
+ <ul>
+ <li>Colour by conservation always enabled and no tick
+ shown in menu when PID shading applied</li>
+ </ul>
+ <em>Application</em>
+ <ul>
+ <li>Jalview projects with views of local PDB structure
+ files saved on Windows cannot be opened on OSX</li>
+ <li>Multiple structure views can be opened and
+ superposed without timeout for structures with multiple
+ models or multiple sequences in alignment</li>
+ <li>Cannot import or associated local PDB files without
+ a PDB ID HEADER line</li>
+ <li>RMSD is not output in Jmol console when
+ superposition is performed</li>
+ <li>Drag and drop of URL from Browser fails for Linux
+ and OSX versions earlier than El Capitan</li>
+ <li>ENA client ignores invalid content from ENA server</li>
+ <li>Exceptions are not raised in console when ENA
+ client attempts to fetch non-existent IDs via Fetch DB
+ Refs UI option</li>
+ <li>Exceptions are not raised in console when a new
+ view is created on the alignment</li>
+ <li>OSX right-click fixed for group selections:
+ CMD-click to insert/remove gaps in groups and CTRL-click
+ to open group pop-up menu</li>
+ </ul>
+ <em>Build and deployment</em>
+ <ul>
+ <li>URL link checker now copes with multi-line anchor
+ tags</li>
+ </ul>
+ <em>New Known Issues</em>
+ <ul>
+ <li>Drag and drop from URL links in browsers do not
+ work on Windows</li>
+ </ul>
+ </div>
+ </td>
+ </tr>
+ <tr>
+ <td width="60" nowrap>
+ <div align="center">
+ <strong><a name="Jalview.2.10.0">2.10.0</a><br /> <em>06/10/2016</em></strong>
</div>
</td>
<td><em>General</em>
<ul>
<li>
+ <!-- JAL-2124 -->Updated Spanish translations.
+ </li>
+ <li>
<!-- JAL-2164,JAL-1919,JAL-2148 -->Jmol now primary parser
for importing structure data to Jalview. Enables mmCIF and
better PDB parsing.
sequences
</li>
<li>
- <!-- JAL- -->
+ <!-- JAL-2213,JAL-1856 -->Improved warning messages when DB
+ Ref Fetcher fails to match, or otherwise updates sequence
+ data from external database records.
</li>
<li>
- <!-- JAL- -->
+ <!-- JAL-2154 -->Revised Jalview Project format for
+ efficient recovery of sequence coding and alignment
+ annotation relationships.
</li>
-
-
- </ul> <em>Applet</em>
+ </ul> <!-- <em>Applet</em>
<ul>
<li>
- <!-- JAL--->
+ -- JAL---
</li>
- </ul></td>
+ </ul> --></td>
<td>
<div align="left">
<em>General</em>
<!-- JAL-1306 -->Quality and Conservation are now shown on
load even when Consensus calculation is disabled
</li>
- <li>
- <!-- -->
- </li>
- <li>
- <!-- JAL- -->
- </li>
- <li>
- <!-- JAL- -->
- </li>
</ul>
<em>Application</em>
<ul>
<li>
- <!-- JAL-1944 not yet fixed Error thrown when exporting a view with hidden sequences as flat-file alignment-->
+ <!-- JAL-1552-->URLs and links can't be imported by
+ drag'n'drop on OSX when launched via webstart (note - not
+ yet fixed for El Capitan)
</li>
<li>
<!-- JAL-1911-->Corrupt preferences for SVG, EPS & HTML
output when running on non-gb/us i18n platforms
</li>
<li>
- <!-- JAL-1552-->URLs and links can imported by drag'n'drop
- on OSX webstart
+ <!-- JAL-1944 -->Error thrown when exporting a view with
+ hidden sequences as flat-file alignment
</li>
<li>
<!-- JAL-2030-->InstallAnywhere distribution fails when
</li>
<li>
<!-- JAL-2036 -->Enable 'Get Cross-References' in menu
- after fetching cross-references
+ after fetching cross-references, and restoring from project
</li>
<li>
<!-- JAL-2032 -->Mouseover of a copy of a sequence is not
</li>
<li>
<!-- JAL-1960 -->Only offer PDB structures in structure
- viewer based on sequence name, PDB and Uniprot
+ viewer based on sequence name, PDB and UniProt
cross-references
</li>
alignment as HTML
</li>
<li>
- <!-- JAL-2213,JAL-1856 -->Improved warning messages when
- DB Ref Fetcher fails to match, or otherwise updates
- sequence data from external database records.
- </li>
- <li>
<!-- JAL-2213 -->Structures not always superimposed after
multiple structures are shown for one or more sequences.
</li>
<!-- JAL-1887 -->Incorrect start and end reported for PDB
to sequence mapping in 'View Mappings' report
</li>
- <li>
- <!-- JAL- -->
- </li>
- <li>
- <!-- JAL- -->
- </li>
-
- <!-- may exclude, this is an external service stability issue JAL-1941 /> RNA 3D structure not added via DSSR service</li> -->
+ <!-- may exclude, this is an external service stability issue JAL-1941
+ -- > RNA 3D structure not added via DSSR service</li> -->
</ul>
<em>Applet</em>
<ul>
regular-expression based URL links (applet and application)
+
+
+
<li>Non-positional feature URL links are shown in link
menu</li>
<li>User-defined sub-tree colours and sub-tree selection
+
+
+
<li>'New Window' button on the 'Output to Text box'
</ul>
<li>Slowed DAS Feature Fetching for increased robustness.
+
+
+
<li>Made angle brackets in ASCII feature descriptions
display correctly
<li>Smooth fonts switch moved to FontChooser dialog box.
+
+
+
</ul>
</td>
git://source.jalview.org / jalview.git / blobdiff