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<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b2)
- * Copyright (C) 2015 The Jalview Authors
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
*
* This file is part of Jalview.
*
<strong><em>A</em></strong>nalysis <strong><em>W</em></strong>eb <strong><em>S</em></strong>ervices
<strong>system</strong> (<strong>JABAWS</strong>)<br> Jalview
includes a client for interacting with programmatic (SOAP) web
- services for the <a href="http://www.compbio.dundee.ac.uk/jabaws">JABAWS</a>
- service model, developed at the University of Dundee by Peter
- Troshin and Geoff Barton. This is an open source system that
- provides a framework for wrapping command line bioinformatics
+ services provided by the <a href="http://www.compbio.dundee.ac.uk/jabaws">JABAWS</a>
+ system, developed at the University of Dundee by Peter
+ Troshin, Sasha Sherstnev, Dan Barton, Fabio Madeira-Marquez, Jim Procter and Geoff Barton.
+ This is an open source system that provides a framework for wrapping command line bioinformatics
analysis programs that enables them to be executed locally or on a
cluster using data and analysis parameters provided by a program
linked with the JABA engine directly or accessing it remotely <em>via</em>
the <a href="webServicesPrefs.html">Web Services Preferences
Panel</a>, and detailed information about a particular service is
available from the help text and web pages accessible from its <a
- href="webServicesParams.html"
- >job parameters dialog box</a>.
+ href="webServicesParams.html">job parameters dialog box</a>.
</p>
<p>
<strong>Obtaining JABAWS</strong><br> One of the aims of JABAWS
stand-alone execution of analysis programs, or as a job submission
engine - enabling larger numbers of jobs to be handled. If you would
like to download and install JABAWS for your own use, please go to <a
- href="http://www.compbio.dundee.ac.uk/jabaws"
- >http://www.compbio.dundee.ac.uk/jabaws</a> for more information.
+ href="http://www.compbio.dundee.ac.uk/jabaws">http://www.compbio.dundee.ac.uk/jabaws</a>
+ for more information.
</p>
<p>
<strong>Configuring your own JABAWS services for use by
Jalview</strong><br> Once you have downloaded and installed JABAWS,
and verified it is working, all that is needed is to add the URL for
your JABAWS server(s) to the list in the <a
- href="webServicesPrefs.html"
- >Web Services Preferences Panel</a>. After adding your service and
- saving your preferences or hitting the 'refresh web services'
- button, you should be able to submit jobs to the server via the
- alignment window's web services menu. Your JABAWS servers list is
- stored in your Jalview preferences, so you will only have to
- configure Jalview once for each new server.
+ href="webServicesPrefs.html">Web Services Preferences
+ Panel</a>. After adding your service and saving your preferences or
+ hitting the 'refresh web services' button, you should be able to
+ submit jobs to the server via the alignment window's web services
+ menu. Your JABAWS servers list is stored in your Jalview
+ preferences, so you will only have to configure Jalview once for
+ each new server.
</p>
<p>
- <em>Support for accessing JABAWS servers was introduced in
- Jalview 2.6.</em>
+ <em>JABAWS Client updated to version 2.2 in Jalview 2.10.2</em>
</p>
<p>
<em>Option for adding JABAWS servers which fails validation was
introduced from version 2.8.2 </em>
</p>
+ <p>
+ <em>Support for accessing JABAWS servers was introduced in
+ Jalview 2.6.</em>
+ </p>
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