* PURPOSE. See the GNU General Public License for more details.
*
* You should have received a copy of the GNU General Public License along with Jalview. If not, see <http://www.gnu.org/licenses/>.
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-<html>
-<head>
-<title>Web Services</title>
-</head>
-<body>
-<p><strong>Web services</strong></p>
-
-<p>Jalview includes clients for a variety of web services for both
-bioinformatic data retrieval and analysis.
-<ul>
- <li>The <a href="../features/seqfetcher.html">Sequence Fetcher</a>
- utilises web services for sequence, alignment and structure retrieval
- provided by the European Bioinformatics Institute (EBI) and Distributed
- Annotation System servers that are capable of serving sequences.</li>
- <li>The DAS Feature Fetcher enables the retrieval and
- visualization of features from DAS annotation sources</li>
- <li>Jalview SOAP Web Services for sequence and alignment analysis
- are provided by the University of Dundee, and are available from the
- Alignment window's <strong> Web Service</strong> menu.</li>
-</ul>
-</p>
-<p>Jalview's distributed computations are SOAP based services
-exposing protein sequence alignment and secondary structure prediction
-programs. These services actually run on the cluster based in the School
-of Life Sciences, University of Dundee, and are maintained by the Barton
-group.</p>
-<p><strong><a name="envision2">Envision2 Services</a></strong></p>
-<p>Jalview 2.5 includes a client to enable the user to
-submit one or more sequences or sequence IDs to analysis workflows provided
-by the <a href="http://www.ebi.ac.uk/enfin-srv/envision2">EnVision2
-web application</a>. This allows Jalview users to easily access the EnCore network of
-databases and analysis services developed by members of <a href="http://www.enfin.org">ENFIN</a>.</p>
-<br/>
-<p><strong>Web Service Dialog Box</strong></p>
-<img src="clwqueued.gif">
-<p>This dialog box is displayed when a web service job is submitted.
-It gives the name of the service and any method citation information,
-and monitors the progress of the calculation. The cancel button will
-permanently cancel the job, but this is only possible for some services.
-</p>
-<p>Current services:
-<ul>
- <a href="msaclient.html"><strong>Multiple Sequence
- Alignment Services</strong></a>
- <ul>
- <li><a href="clustalw.html">ClustalW Multiple Alignment and
- re-alignment</a><br>
- The clustal W service remains one of the more popular Jalview
- features.</li>
- <li><a href="muscle.html">Muscle Multiple Alignment</a><br>
- High Quality and High Throughput multiple alignments of proteins. This
- method can sometimes be more accurate than ClustalW when dealing with
- diverse sets of sequences.</li>
- <li><a href="mafft.html">MAFFT</a><br>
- Multiple Alignment with Fast Fourier Transforms - a highly accurate
- and high throughput dna and amino acid alignment method, performing at
- least as well as ClustalW and Muscle.</li>
- </ul>
- </li>
- <li><strong>Secondary Structure Prediction</strong>
- <ul>
- <li><a href="jnet.html">JNet</a><br>
- This is a front end to the existing <a
- href="http://www.compbio.dundee.ac.uk/www-jpred/">JNet www server</a>
- allowing single sequence or profile based prediction.</li>
- </ul>
- </li>
-</ul>
-</p>
-<!-- <p>Watch this space! These are some of the services
- planned to be released soon:<ul>
- <li>More alignment services: PROBCONS, T-COFFEE</li>
- <li>Repeat analysis
- </li>
- <li>Remote Homology Detection<br>
- </li>
- </ul>
- In the future, Jalview will also be able to new discover services
- dynamically, and distribute expensive analysis functions like <a
- href="../calculations/pca.html">PCA</a> to the Dundee machines.</p>-->
-</body>
-</html>
+-->
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