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[jalview.git] / help / html / webServices / jnet.html

diff --git a/help/html/webServices/jnet.html b/help/html/webServices/jnet.html
index a94ec44..7a6015a 100755 (executable)
--- a/help/html/webServices/jnet.html
+++ b/help/html/webServices/jnet.html
@@ -36,6 +36,12 @@ then the alignment will be used for a Jnet prediction on the
 nearest the top of the alignment window).\r
 </li>\r
 </ul>\r
+<p><strong>Note</strong>: JNet secondary structure prediction is a\r
+ 'non-column-separable' service - predictions are based on the\r
+ sequence profile of contiguous stretches of amino-acid sequence. This\r
+ means that all columns of the alignment, or selection will be submitted\r
+ for prediction, not just the visible ones (see <a\r
+ href="../features/hiddenRegions.html">hiding columns</a>).\r
 <p>The result of a JNet prediction for a sequence is a new annotated\r
  alignment window:</p>\r
 <img src="jnetprediction.gif">\r