-<html>\r
-<head>\r
-<title>Multiple Sequence Alignment Web Service</title>\r
-</head>\r
-<body>\r
-<strong>Multiple Sequence Alignment Web Services</strong>\r
-<p>\r
-Multiple sequence alignment services are accessed from the <strong>Web\r
-Service→Alignment</strong> menu. When an entry from this menu is\r
-selected, either the currently selected residues, or the whole\r
-sequence set (if there is no selection or only one sequence is\r
-selected) will be submitted for multiple sequence alignment.\r
-</p>\r
-<p>There are two kinds of multiple sequence alignment operations\r
-available:<ul>\r
-<li><em>alignment</em> - where a new alignment is constructed from the input\r
-</li>\r
-<li><em>realignment</em> -\r
-where any existing alignments in the input are passed to the service\r
-for profile based alignment.\r
-</li>\r
-</ul>\r
-</p>\r
-<p>\r
-<strong>Multiple Alignments of Sequences with hidden columns</strong><br>\r
-Multiple alignment services are 'column separable' analysis\r
-operations. If the input contains <a\r
-href="../features/hiddenRegions.html">hidden columns</a> then each\r
-visible segment of the input sequence set will be submitted for\r
-alignment separately, and the results concatenated (with the hidden\r
-regions preserved) once all alignment functions have completed. Each\r
-sub-job's state is reported in its own tab:\r
-<p><center><strong>Multiple Multiple Sequence Alignment sub jobs running at\r
-once</strong><center></p>\r
-<center><img src="multimafftjbs.gif" align="centre"></center>\r
-</p>\r
-</body>\r
-</html>\r
+<html>
+<!--
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.5)
+ * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
+ *
+ * This file is part of Jalview.
+ *
+ * Jalview is free software: you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License
+ * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
+ *
+ * Jalview is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
+ * PURPOSE. See the GNU General Public License for more details.
+ *
+ * You should have received a copy of the GNU General Public License along with Jalview. If not, see <http://www.gnu.org/licenses/>.
+--!>
+<head>
+<title>Multiple Sequence Alignment Web Service</title>
+</head>
+<body>
+<strong>Multiple Sequence Alignment Web Services</strong>
+<p>
+Multiple sequence alignment services are accessed from the <strong>Web
+Service→Alignment</strong> menu. When an entry from this menu is
+selected, either the currently selected residues, or the whole
+sequence set (if there is no selection or only one sequence is
+selected) will be submitted for multiple sequence alignment.
+</p>
+<p>There are two kinds of multiple sequence alignment operations
+available:<ul>
+<li><em>alignment</em> - where a new alignment is constructed from the input
+</li>
+<li><em>realignment</em> -
+where any existing alignments in the input are passed to the service
+for profile based alignment.
+</li>
+</ul>
+</p>
+<p>
+<strong>Multiple Alignments of Sequences with hidden columns</strong><br>
+Multiple alignment services are 'column separable' analysis
+operations. If the input contains <a
+href="../features/hiddenRegions.html">hidden columns</a> then each
+visible segment of the input sequence set will be submitted for
+alignment separately, and the results concatenated (with the hidden
+regions preserved) once all alignment functions have completed. Each
+sub-job's state is reported in its own tab:
+<p><center><strong>Multiple Multiple Sequence Alignment sub jobs running at
+once</strong><center></p>
+<center><img src="multimafftjbs.gif" align="centre"></center>
+</p>
+</body>
+</html>
git://source.jalview.org / jalview.git / blobdiff