* PURPOSE. See the GNU General Public License for more details.
*
* You should have received a copy of the GNU General Public License along with Jalview. If not, see <http://www.gnu.org/licenses/>.
---!>
-<head>
-<title>Multiple Sequence Alignment Web Service</title>
-</head>
-<body>
-<strong>Multiple Sequence Alignment Web Services</strong>
-<p>
-Multiple sequence alignment services are accessed from the <strong>Web
-Service→Alignment</strong> menu. When an entry from this menu is
-selected, either the currently selected residues, or the whole
-sequence set (if there is no selection or only one sequence is
-selected) will be submitted for multiple sequence alignment.
-</p>
-<p>There are two kinds of multiple sequence alignment operations
-available:<ul>
-<li><em>alignment</em> - where a new alignment is constructed from the input
-</li>
-<li><em>realignment</em> -
-where any existing alignments in the input are passed to the service
-for profile based alignment.
-</li>
-</ul>
-</p>
-<p>
-<strong>Multiple Alignments of Sequences with hidden columns</strong><br>
-Multiple alignment services are 'column separable' analysis
-operations. If the input contains <a
-href="../features/hiddenRegions.html">hidden columns</a> then each
-visible segment of the input sequence set will be submitted for
-alignment separately, and the results concatenated (with the hidden
-regions preserved) once all alignment functions have completed. Each
-sub-job's state is reported in its own tab:
-<p><center><strong>Multiple Multiple Sequence Alignment sub jobs running at
-once</strong><center></p>
-<center><img src="multimafftjbs.gif" align="centre"></center>
-</p>
-</body>
-</html>
+-->
git://source.jalview.org / jalview.git / blobdiff