+++ /dev/null
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-<html>
-<head>
-<title>Web Service Job Parameter Dialog Box</title>
-</head>
-<body>
- <p>
- <strong>Web service Job Parameter Dialog box</strong>
- </p>
-
- <p>
- Some Jalview services, including those provided by <a
- href="JABAWS.html">JABAWS</a>, support a range of parameters
- and options, enabling you to employ the most appropriate settings
- for the input data. In addition to any preset combinations provided
- by services themselves, the Web services parameters dialog box also
- allows you to create and store your own parameter sets, so they can
- be accessed quickly from the presets menu.
- </p>
- <p>
- <Strong>Accessing the parameter dialog box</Strong><br> The
- parameters dialog box is opened by selecting the 'Edit and Run' menu
- entries within the JABAWS analysis submenu of the alignment window's
- web services menu. Once opened, it presents the parameters and
- options available for the chosen analysis for you to modify, and and
- also enables you to browse any available service presets and select,
- create or modify your own user defined parameter sets. Once you are
- satisfied with the analysis parameters, press the <strong>Start
- Job</strong> button to initiate the analysis.
- </p>
- <p>
- <Strong>Getting help on the analysis parameters</Strong><br>
- Each option or parameter shown in the dialog is accompanied by a
- brief description, which is shown as a tooltip when the mouse is
- moved over it. For some, a link symbol will also be shown (as in the
- example below), indicating that further information is available
- online. In this case, right-clicking (or command-click) will open a
- pop-up menu allowing you to select a URL to open in your web
- browser.
- </p>
- <p>
- <center>
- <img src="wsparams.gif" align="center" width="480" height="499"
- alt="Analysis Parameters Dialog Box for JABAWS Services">
- <br> Parameter settings dialog box for JABAWS MAFFT Service
- </center>
- </p>
- <p>The menu and text box at the top of the dialog box displays the
- name of the current parameter set. The name can be edited, should
- you wish to change or create a new user defined set, or clicked to
- present a menu enabling other sets to be browsed. The description
- shown below may also be edited (and the box resized to facilitate
- this), allowing you to provide notes to accompany the parameter set.
- The modification of these or any of the option or parameter settings
- will enable one or more of the following buttons, that allow you to:
-
-
- <ul>
- <li><em>Revert</em> the changes you have made. This will undo
- any changes you have made to the parameters and options with
- respect to the currently selected parameter set, reverting each
- setting to its default or last saved value.</li>
- <li><em>Create</em> a new parameter set. Selecting this option
- will create a new parameter set with the given name. New parameter
- sets will be saved for the current session, but a file chooser
- will also open which gives you the option to save the set for use
- in future sessions.</li>
- <li><em>Update</em> an existing user defined parameter set.
- This button will save any modifications you have made to the
- current parameter set.</li>
- <li><em>Rename</em> the current user defined parameter set.
- This will update the name recorded for the current parameter set.</li>
- <li><em>Delete</em> the current parameter set. Selecting this
- will erase the current user defined parameter set from memory, and
- delete its associated parameter file (if it exists).</li>
- </ul>
- </p>
- <p>
- <em>Support for adjusting and saving web service parameter sets
- was added in Jalview 2.6</em>
- </p>
-</body>
-</html>
git://source.jalview.org / jalview.git / blobdiff