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-<html>
-<!--
- * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
- * Copyright (C) $$Year-Rel$$ The Jalview Authors
- *
- * This file is part of Jalview.
- *
- * Jalview is free software: you can redistribute it and/or
- * modify it under the terms of the GNU General Public License
- * as published by the Free Software Foundation, either version 3
- * of the License, or (at your option) any later version.
- *
- * Jalview is distributed in the hope that it will be useful, but
- * WITHOUT ANY WARRANTY; without even the implied warranty
- * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
- * PURPOSE. See the GNU General Public License for more details.
- *
- * You should have received a copy of the GNU General Public License
- * along with Jalview. If not, see <http://www.gnu.org/licenses/>.
- * The Jalview Authors are detailed in the 'AUTHORS' file.
- -->
-<head>
-<title>What's new ?</title>
-</head>
-<body>
- <p>
- <strong>What's new in Jalview 2.10.5 ?</strong>
- </p>
- <p>Jalview 2.10.5 is a minor release that includes critical
- patches for users working with Ensembl, RNA secondary structure
- annotation, and those running Jalview on OSX with Java 10.</p>
- <ul>
- <li>Jalview's default memory limit increased to 1G. <br/>If you have
- problems starting Jalview 2.10.5 and you have 1G or less
- physical memory on your machine, you will need to <a
- href="memory.html#memsetting">reduce the memory</a> allocated to
- Jalview.
- </li>
- <li>EPS, PNG and SVG export now includes hidden sequence
- markers, and representative sequences are marked in bold.</li>
- <li>Ensembl Client updated for Ensembl Rest API v7.<br />The
- latest Ensembl API is not backwards compatible with earlier
- versions of Jalview, so if you require Ensembl functionality you
- will need to install this release.
- </li>
- <li>Improved support for VIENNA extended dot-bracket notation
- for RNA secondary structure.</li>
- <li>Positional and selected region highlighting in VARNA
- 'trimmed sequence' view made more reliable.</li>
- </ul>
- <p>
- The full list of bugs fixed in this release can be found in the <a
- href="releases.html#Jalview.2.10.5">2.10.5 Release Notes</a>. The
- majority of bug fixes and improvements in 2.10.5 are due to Jalview users
- contacting us via the jalview-discuss email list. Thanks to everyone
- who took the time to help make Jalview better !
- </p>
- <p>
- <strong>Jalview and Java 10</strong>
- </p>
- <p>This release addresses a critical bug for OSX users who are
- running Jalview with Java 10 which can prevent files being saved
- correctly through the 'Save As' dialog box.</p>
- <em>Known Issues</em>
- <ul>
- <li>OSX: The 'Open File' dialog for Jalview's Groovy Console
- appears with the title 'Save As', and attempting to select a file to load yields a FileNotFound exception.</br>The workaround is to first clear the 'Untitled' filename before selecting the file you wish to load.
- </li>
- <li>OSX: Links don't open when clicked on or via the Sequence or Alignment window popup menu.</li>
- <li>OSX (Webstart): Jalview only displays old news feed items</li>
- </ul>
-</body>
-</html>
git://source.jalview.org / jalview.git / blobdiff