JAL-4090 release notes for JAL-1713 JAL-2528 and known issue report for JAL-4127

[jalview.git] / help / markdown / releases / release-2_11_3_0.md

diff --git a/help/markdown/releases/release-2_11_3_0.md b/help/markdown/releases/release-2_11_3_0.md
index e527792..5f57feb 100644 (file)
--- a/help/markdown/releases/release-2_11_3_0.md
+++ b/help/markdown/releases/release-2_11_3_0.md
@@ -64,6 +64,7 @@ channel: "release"
 - <!-- JAL-4315 --> Drag and drop feature colours file on an alignment to quickly apply feature settings
 - <!-- JAL-3676 --> Allow log level configuration via Jalview's Java Console, and a Copy to Clipboard button
 - <!-- JAL-4304,JAL-4305 --> Upgrade bundled groovy to v4.0.15 and regularised interface for groovy scripts run from CLI, interactively and headlessly.
+- <!-- JAL-1713,JAL-2528 --> Overview display and hidden region visibility stored in Jalview projects
 
 ### Development and Deployment
 - <!-- JAL-4054 --> Installers built with install4j10
@@ -104,7 +105,9 @@ channel: "release"
 - <!-- JAL-4298 --> Java Console opening at startup with the exampleFile_v2_7.jvp opening (nearly always) causes Jalview to hang
 - <!-- JAL-4282 --> automatic positioning of ID width for imported project can fail for certain font size configured in User preferences (affects most versions of Jalview prior to 2.11.3.0)
 - <!-- JAL-4223 --> RNAML import missing terminal residue
+- <!-- JAL-3088 --> RNA secondary structure annotation final-ending-solo-brace arrow points the wrong way
 - <!-- JAL-4218 --> Jalview source distribution unnecessarily includes dist directory with built jalview jar and dependencies
+- <!-- JAL-3921 --> Jmol sessions involving large molecules may not be fully saved in Jalview project files (known defect in 2.11.2.x)
 
 ## New Known defects
 - <!-- JAL-4303 --> EBI-AlphaFold PLDDT colours cannot be overlaid on alignment via 'Colour by annotation' unless the alignment's colourscheme has been set to 'None' via the Colours menu.
@@ -120,5 +123,6 @@ channel: "release"
 - <!-- JAL-4323 --> scripts adding new fileformats or colourschemes do not work when run via command line
 - <!-- JAL-4290 --> Headless alignment export with structure annotations doesn't include secondary structure and temperature factor
 - <!-- JAL-4151 --> Copy sequences from one alignment and Pasting as new window in another alignment doesn't propagate title from original alignment's window
+- <!-- JAL-4127 --> 'Reload' for a jalview project results in all windows being duplicated (since 2.11.2.6, more severe in 2.11.3.0)