apply gpl development license

[jalview.git] / resources / embl_mapping.xml

diff --git a/resources/embl_mapping.xml b/resources/embl_mapping.xml
index 2f3f046..c203c71 100644 (file)
--- a/resources/embl_mapping.xml
+++ b/resources/embl_mapping.xml
@@ -1,12 +1,28 @@
 <?xml version="1.0"?>\r
 <!--\r
-       History: Originally created from EMBL_common_V1.0\r
-       Updated on 24th April 2007 for WsDBFetch Service move to EMBL_Services_V1.1.xsd\r
-       -->
-       \r
+   * Jalview - A Sequence Alignment Editor and Viewer (Development Version 2.4.1)\r
+   * Copyright (C) 2009 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle\r
+   * \r
+   * This program is free software; you can redistribute it and/or\r
+   * modify it under the terms of the GNU General Public License\r
+   * as published by the Free Software Foundation; either version 2\r
+   * of the License, or (at your option) any later version.\r
+   * \r
+   * This program is distributed in the hope that it will be useful,\r
+   * but WITHOUT ANY WARRANTY; without even the implied warranty of\r
+   * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the\r
+   * GNU General Public License for more details.\r
+   * \r
+   * You should have received a copy of the GNU General Public License\r
+   * along with this program; if not, write to the Free Software\r
+   * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA  02110-1301, USA\r
+-->\r
 <mapping xmlns="http://castor.exolab.org/" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"\r
        xsi:schemaLocation="http://castor.exolab.org/ ../schemas/castor-mapping.xsd">\r
-       <!-- -->\r
+<!--\r
+       History: Originally created from EMBL_common_V1.0\r
+       Updated on 24th April 2007 for WsDBFetch Service move to EMBL_Services_V1.1.xsd\r
+       -->\r
        <class name="jalview.datamodel.xdb.embl.EmblFile">\r
                <map-to xml="EMBL_Services"/>\r
                <field name="entries" type="jalview.datamodel.xdb.embl.EmblEntry" collection="vector">\r
@@ -19,8 +35,8 @@
        </class>\r
        <class name="jalview.datamodel.xdb.embl.EmblEntry">\r
                <map-to xml="entry"/>\r
-               <field name="accession" type="string">
-                       <bind-xml location="accession" node="attribute"/>
+               <field name="accession" type="string">\r
+                       <bind-xml location="accession" node="attribute"/>\r
                </field>\r
                <field name="lastUpdated" type="string">\r
                        <bind-xml location="last-updated" node="attribute"/>\r
@@ -35,14 +51,14 @@
                <field name="rLastUpdated" type="string">\r
                        <bind-xml location="releaseLastUpdated" node="attribute"/>\r
                </field>\r
-               <field name="desc" type="string">
-                       <bind-xml name="description" node="element"/>
+               <field name="desc" type="string">\r
+                       <bind-xml name="description" node="element"/>\r
                </field>\r
                <field name="Keywords" type="string" collection="vector">\r
                        <bind-xml name="keyword" node="element"/>\r
                </field>\r
                <field name="features" type="jalview.datamodel.xdb.embl.EmblFeature" collection="vector">\r
-                       <bind-xml name="feature"/>
+                       <bind-xml name="feature"/>\r
                </field>\r
                <field name="dbRefs" type="jalview.datamodel.DBRefEntry" collection="vector">\r
                        <bind-xml name="dbreference" />\r
@@ -51,7 +67,7 @@
                        <bind-xml name="sequence"/> <!-- location="sequence" node="element"/ -->\r
                </field>\r
        </class>\r
-       <class name="jalview.datamodel.xdb.embl.EmblSequence">
+       <class name="jalview.datamodel.xdb.embl.EmblSequence">\r
                <map-to xml="sequence"/>\r
                <field name="type" type="string">\r
                        <bind-xml name="type" node="attribute" location="type"/>\r
@@ -61,15 +77,15 @@
                </field>\r
                <field name="sequence" type="string">\r
                        <bind-xml node="text"/>\r
-               </field>
+               </field>\r
        </class>\r
        <class name="jalview.datamodel.xdb.embl.EmblFeature" verify-constructable="false">\r
                <map-to xml="feature"/>\r
-               <field name="name" type="string">
-                       <bind-xml name="name" node="attribute"/>
+               <field name="name" type="string">\r
+                       <bind-xml name="name" node="attribute"/>\r
                </field>\r
-               <field name="dbRefs" type="jalview.datamodel.DBRefEntry" collection="vector">
-                       <bind-xml name="dbreference" node="element"/>
+               <field name="dbRefs" type="jalview.datamodel.DBRefEntry" collection="vector">\r
+                       <bind-xml name="dbreference" node="element"/>\r
                </field>\r
                <field name="qualifiers" type="jalview.datamodel.xdb.embl.Qualifier" collection="vector">\r
                        <bind-xml name="qualifier"/>\r
@@ -89,7 +105,7 @@
                        <bind-xml name="secondary" node="attribute"/>\r
                </field>\r
        </class>\r
-       <class  name="jalview.datamodel.xdb.embl.Qualifier" verify-constructable="false">
+       <class  name="jalview.datamodel.xdb.embl.Qualifier" verify-constructable="false">\r
                <map-to xml="Qualifier"/>\r
                <field name="name">\r
                        <bind-xml name="name" node="attribute"/>\r
@@ -131,12 +147,12 @@
                        <bind-xml name="basePosition" node="element"/>\r
                </field>\r
        </class>\r
-       <class name="jalview.datamodel.xdb.embl.BasePosition">
+       <class name="jalview.datamodel.xdb.embl.BasePosition">\r
                <map-to xml="basePosition"/>\r
-               <field name="type">
-                       <bind-xml name="type" node="attribute"/>
+               <field name="type">\r
+                       <bind-xml name="type" node="attribute"/>\r
                </field>\r
-               <field name="pos">
+               <field name="pos">\r
                        <bind-xml node="text"/>\r
                </field>\r
        </class>\r