JAL-2937 use preferences for presets, simplify some constructors

[jalview.git] / resources / lang / Messages.properties

diff --git a/resources/lang/Messages.properties b/resources/lang/Messages.properties
index bcd0bbd..b3afc6a 100644 (file)
--- a/resources/lang/Messages.properties
+++ b/resources/lang/Messages.properties
@@ -964,7 +964,6 @@ label.groovy_support_failed = Jalview Groovy Support Failed
 label.couldnt_create_groovy_shell = Couldn't create the groovy Shell. Check the error log for the details of what went wrong.
 error.unsupported_version_calcIdparam = Unsupported Version for calcIdparam {0}
 error.implementation_error_cant_reorder_tree = Implementation Error: Can't reorder this tree. Not DefaultMutableTreeNode.
-error.invalid_value_for_option = Invalid value {0} for option {1}
 error.implementation_error_cannot_import_vamsas_doc = Implementation Error - cannot import existing vamsas document into an existing session, Yet!
 label.vamsas_doc_couldnt_be_opened_as_new_session = VAMSAS Document could not be opened as a new session - please choose another
 error.implementation_error_vamsas_operation_not_init = Impementation error! Vamsas Operations when client not initialised and connected
@@ -1378,8 +1377,10 @@ label.hmmbuild = hmmbuild
 label.hmmbuild_group = Build HMM from Selected Group
 label.group_hmmbuild = Build HMM from Group
 label.hmmsearch = hmmsearch
+label.installation = Installation
 label.hmmer_location = HMMER Binaries Installation Location
 label.cygwin_location = Cygwin Binaries Installation Location (Windows)
+label.information_annotation = Information Annotation
 warn.null_hmm = Please ensure the alignment contains a hidden Markov model
 label.ignore_below_background_frequency = Ignore Below Background Frequency
 label.information_description = Information content, measured in bits
@@ -1411,10 +1412,10 @@ label.dom_e_value = Domain E-value Cutoff
 label.dom_score = Domain Score Threshold
 label.number_of_results_desc = The maximum number of results that hmmsearch will return
 label.auto_align_seqs_desc = If true, all fetched sequences will be aligned to the hidden Markov model with which the search was performed
-label.use_accessions_desc = If true, the accession number of each sequence is returned, rather than that sequences name
-label.seq_e_value_desc = The E-value cutoff for returned sequences
+label.use_accessions_desc = If true, the accession number of each sequence is returned, rather than that sequence's name
+label.seq_e_value_desc = The E-value cutoff for returned sequences (hmmsearch -E)
 label.seq_score_desc = The score threshold for returned sequences
-label.dom_e_value_desc = The E-value cutoff for returned domains
+label.dom_e_value_desc = The E-value cutoff for returned domains (hmmsearch -domE)
 label.dom_score_desc = The score threshold for returned domains
 label.not_enough_sequences = There are not enough sequences to run {0}
 label.add_database = Add Database