JAL-2629 refactoring of Hmmer preferences

[jalview.git] / resources / lang / Messages.properties

diff --git a/resources/lang/Messages.properties b/resources/lang/Messages.properties
index b5547cb..d9cfc6d 100644 (file)
--- a/resources/lang/Messages.properties
+++ b/resources/lang/Messages.properties
@@ -1143,9 +1143,9 @@ status.loading_cached_pdb_entries = Loading Cached PDB Entries
 status.searching_for_pdb_structures = Searching for PDB Structures
 status.opening_file_for = opening file for
 status.colouring_chimera = Colouring Chimera
-status.running_hmmbuild = "Building hidden Markov model"
-status.running_hmmalign = "Creating alignment with hidden Markov model"
-status.running_hmmsearch = "Searching for matching sequences"
+status.running_hmmbuild = Building Hidden Markov Model
+status.running_hmmalign = Creating alignment with Hidden Markov Model
+status.running_hmmsearch = Searching for matching sequences
 label.font_doesnt_have_letters_defined = Font doesn't have letters defined\nso cannot be used\nwith alignment data
 label.font_too_small = Font size is too small
 label.error_loading_file_params = Error loading file {0}
@@ -1320,12 +1320,10 @@ label.hmmbuild = hmmbuild
 label.hmmbuild_group = Build HMM from Selected Group
 label.group_hmmbuild = Build HMM from Group
 label.hmmsearch = hmmsearch
-label.change_hmmer_location = HMMER Binaries Installation Location
+label.hmmer_location = HMMER Binaries Installation Location
 warn.null_hmm = Please ensure the alignment contains a hidden Markov model.
 label.ignore_below_background_frequency = Ignore Below Background Frequency
 label.information_description = Information content, measured in bits
-label.enter_location = Please enter the path of your HMMER binaries folder.
-label.invalid_hmmer_folder = The folder that you selected does not contain the necessary HMMER binaries.
 warn.no_selected_hmm = Please select a hidden Markov model sequence.
 label.select_hmm = Select HMM
 warn.no_sequence_data = No sequence data found.
@@ -1339,15 +1337,14 @@ label.freq_alignment = Use Alignment Background Frequencies
 label.freq_uniprot = Use Uniprot Background Frequencies
 label.hmmalign_label = hmmalign Options
 label.hmmsearch_label = hmmsearch Options
-label.hmmbuild_not_found = The hmmbuild binary was not found.
-label.hmmalign_not_found = The hmmalign binary was not found.
-label.hmmsearch_not_found = The hmmsearch binary was not found.
-warn.hmmbuild_failed = hmmbuild was not found. 
-warn.align_failed = hmmalign was not found.
+label.hmmbuild_not_found = The hmmbuild binary was not found
+label.hmmalign_not_found = The hmmalign binary was not found
+label.hmmsearch_not_found = The hmmsearch binary was not found
+warn.hmm_command_failed = hmm command not found
 label.invalid_folder = Invalid Folder
 label.folder_not_exists = HMMER binaries not found. \n Please enter the path to the HMMER binaries (if installed).
 label.hmmer_installed = HMMER installed
-label.hmmer_no_sequences_found = No sequences found.
+label.hmmer_no_sequences_found = No sequences found
 label.number_of_results = Number of Results to Return
 label.auto_align_seqs = Automatically Align Fetched Sequences
 label.use_accessions = Return Accessions