label.feature_settings_click_drag = Drag up or down to change render order.<br/>Double click to select columns containing feature.
label.transparency_tip = Adjust transparency to 'see through' feature colours.
label.opt_and_params_further_details = see further details by right-clicking
-label.opt_and_params_show_brief_desc_image_link = <html>Click to show brief description<br><img src="{0}"/> Right click for further information.</html>
-label.opt_and_params_show_brief_desc = <html>Click to show brief description<br></html>
+label.opt_and_params_show_brief_desc_image_link = Click to show brief description<br><img src="{0}"/> Right click for further information.
+label.opt_and_params_show_brief_desc = Click to show brief description<br>
label.adjusts_width_generated_eps_png = <html>Adjusts the width of the generated EPS or PNG file to ensure even the longest sequence ID or annotation label is displayed</html>
label.manually_specify_width_left_column = <html>Manually specify the width of the left hand column where sequence IDs and annotation labels will be rendered in exported alignment figures. This setting will be ignored if 'Automatically set ID width' is set</html>
label.job_created_when_checked = <html>When checked, a job is created for every sequence in the current selection.</html>
label.save_alignment_to_file = Save Alignment to file
label.save_features_to_file = Save Features to File
label.save_annotation_to_file = Save Annotation to File
-label.no_features_on_alignment = No features found on alignment
label.save_pdb_file = Save PDB File
label.save_text_to_file = Save Text to File
label.save_state = Save State
label.couldnt_create_groovy_shell = Couldn't create the groovy Shell. Check the error log for the details of what went wrong.
error.unsupported_version_calcIdparam = Unsupported Version for calcIdparam {0}
error.implementation_error_cant_reorder_tree = Implementation Error: Can't reorder this tree. Not DefaultMutableTreeNode.
-error.invalid_value_for_option = Invalid value {0} for option {1}
error.implementation_error_cannot_import_vamsas_doc = Implementation Error - cannot import existing vamsas document into an existing session, Yet!
label.vamsas_doc_couldnt_be_opened_as_new_session = VAMSAS Document could not be opened as a new session - please choose another
error.implementation_error_vamsas_operation_not_init = Impementation error! Vamsas Operations when client not initialised and connected
label.cached_structures = Cached Structures
label.free_text_search = Free Text Search
label.hmmalign = hmmalign
+label.use_hmm = HMM profile to use
label.hmmbuild = hmmbuild
-label.hmmbuild_group = Build HMM from Selected Group
-label.group_hmmbuild = Build HMM from Group
label.hmmsearch = hmmsearch
+label.installation = Installation
label.hmmer_location = HMMER Binaries Installation Location
-warn.null_hmm = Please ensure the alignment contains a hidden Markov model.
+label.cygwin_location = Cygwin Binaries Installation Location (Windows)
+label.information_annotation = Information Annotation
label.ignore_below_background_frequency = Ignore Below Background Frequency
label.information_description = Information content, measured in bits
-warn.no_selected_hmm = Please select a hidden Markov model sequence.
-label.select_hmm = Select HMM
-warn.no_sequence_data = No sequence data found.
-warn.empty_grp_or_alignment = An empty group or alignment was found.
+warn.no_hmm = No Hidden Markov model found.\nRun hmmbuild or load an HMM file first.
label.no_sequences_found = No matching sequences, or an error occurred.
label.hmmer = HMMER
label.trim_termini = Trim Non-Matching Termini
label.trim_termini_desc = If true, non-matching regions on either end of the resulting alignment are removed.
-label.no_of_sequences = Sequences Returned
-label.freq_alignment = Use Alignment Background Frequencies
-label.freq_uniprot = Use Uniprot Background Frequencies
-label.hmmalign_label = hmmalign Options
-label.hmmsearch_label = hmmsearch Options
-label.hmmbuild_not_found = The hmmbuild binary was not found
-label.hmmalign_not_found = The hmmalign binary was not found
-label.hmmsearch_not_found = The hmmsearch binary was not found
-warn.hmm_command_failed = hmm command not found
+label.no_of_sequences = Number of sequences returned
+label.freq_alignment = Use alignment background frequencies
+label.freq_uniprot = Use Uniprot background frequencies
+label.hmmalign_options = hmmalign options
+label.hmmsearch_options = hmmsearch options
+label.executable_not_found = The ''{0}'' executable file was not found
+warn.command_failed = {0} failed
label.invalid_folder = Invalid Folder
-label.folder_not_exists = HMMER binaries not found. \n Please enter the path to the HMMER binaries (if installed).
-label.hmmer_installed = HMMER installed
-label.hmmer_no_sequences_found = No sequences found
label.number_of_results = Number of Results to Return
label.auto_align_seqs = Automatically Align Fetched Sequences
label.use_accessions = Return Accessions
label.seq_score = Sequence Score Threshold
label.dom_e_value = Domain E-value Cutoff
label.dom_score = Domain Score Threshold
-label.number_of_results_desc = The maximum number of results that hmmsearch will return
+label.number_of_results_desc = The maximum number of hmmsearch results to display
label.auto_align_seqs_desc = If true, all fetched sequences will be aligned to the hidden Markov model with which the search was performed
-label.use_accessions_desc = If true, the accession number of each sequence is returned, rather than that sequences name
-label.seq_e_value_desc = The E-value cutoff for returned sequences
+label.use_accessions_desc = If true, the accession number of each sequence is returned, rather than that sequence's name
+label.seq_e_value_desc = The E-value cutoff for returned sequences (hmmsearch -E)
label.seq_score_desc = The score threshold for returned sequences
-label.dom_e_value_desc = The E-value cutoff for returned domains
+label.dom_e_value_desc = The E-value cutoff for returned domains (hmmsearch -domE)
label.dom_score_desc = The score threshold for returned domains
-label.not_enough_sequences = There are not enough sequences to run {0}
label.add_database = Add Database
label.this_alignment = This alignment
-warn.file_not_exists = File does not exist
warn.invalid_format = This is not a valid database file format. The current supported formats are Fasta, Stockholm and Pfam.
label.database_for_hmmsearch = The database hmmsearch will search through
label.use_reference = Use Reference Annotation
label.use_reference_desc = If true, hmmbuild will keep all columns defined as a reference position by the reference annotation
-label.hmm_name = HMM Name
-label.hmm_name_desc = The name given to the HMM.
-warn.no_reference_annotation = No reference annotation found.
+label.hmm_name = Alignment HMM Name
+label.hmm_name_desc = The name given to the HMM for the alignment
+warn.no_reference_annotation = No reference annotation found
label.hmmbuild_for = Build HMM for
-label.hmmbuild_for_desc = Build an HMM for the selected sequence groups.
+label.hmmbuild_for_desc = Build an HMM for the selected sets of sequences
label.alignment = Alignment
label.groups_and_alignment = All groups and alignment
label.groups = All groups
git://source.jalview.org / jalview.git / blobdiff