JAL-4386 - Implementation of substitution matrix and test cases.

[jalview.git] / resources / scoreModel / secondarystructure.scm

diff --git a/resources/scoreModel/secondarystructure.scm b/resources/scoreModel/secondarystructure.scm
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+ScoreMatrix SECONDARYSTRUCTURE
+#
+# The SECONDARY STRUCTURE substitution matrix, as in <paper name>
+# The first line declares a ScoreMatrix with the name SECONDARYSTRUCTURE (shown in menus)
+#
+# Scores are not symbol case sensitive, unless column(s) are provided for lower case characters
+# The 'guide symbol' at the start of each row of score values is optional
+# Values may be integer or floating point, delimited by tab, space, comma or combinations
+#
+        E       H       C       * 
+E       1       0       0       0
+H       0       1       0       0
+C       0       0       1       0
+*       0       0       0       1
\ No newline at end of file