--- /dev/null
+<?xml version="1.0" encoding="UTF-8"?>
+<xsd:schema targetNamespace="http://www.ebi.ac.uk/pdbe/docs/sifts/eFamily.xsd"
+ elementFormDefault="qualified" attributeFormDefault="unqualified"
+ xmlns:data="http://www.ebi.ac.uk/pdbe/docs/sifts/dataTypes.xsd"
+ xmlns:xsd="http://www.w3.org/2001/XMLSchema"
+ xmlns="http://www.ebi.ac.uk/pdbe/docs/sifts/alignment.xsd" version="1.1">
+ <xsd:import namespace="http://www.ebi.ac.uk/pdbe/docs/sifts/dataTypes.xsd"
+ schemaLocation="dataTypes.xsd"/>
+ <xsd:element name="alignment">
+ <xsd:annotation>
+ <xsd:documentation>This section of the schema deals with alignments. The alignment can be either a sequence alignment or a structural alignment.</xsd:documentation>
+ </xsd:annotation>
+ <xsd:complexType>
+ <xsd:sequence>
+ <xsd:element name="alignObject" maxOccurs="unbounded">
+ <xsd:annotation>
+ <xsd:documentation>description of object. id e.g. 1tim.A,8tim.B, P001228, ...; type: type of object e.g.: protein, dna. version: last time this object has been changed (sometimes not so easy to know ...)</xsd:documentation>
+ </xsd:annotation>
+ <xsd:complexType>
+ <xsd:sequence>
+ <xsd:element name="alignObjectDetail" minOccurs="0"
+ maxOccurs="unbounded">
+ <xsd:complexType mixed="true">
+ <xsd:attributeGroup ref="data:detail"/>
+ </xsd:complexType>
+ </xsd:element>
+ <xsd:element name="sequence" minOccurs="0">
+ <xsd:complexType mixed="true">
+ <xsd:attributeGroup ref="data:region"/>
+ </xsd:complexType>
+ </xsd:element>
+ </xsd:sequence>
+ <xsd:attribute name="objectVersion" type="xsd:string" use="required"/>
+ <xsd:attribute name="intObjectId" type="xsd:string" use="required"/>
+ <xsd:attribute name="type" type="xsd:string" use="optional"/>
+ <xsd:attributeGroup ref="data:dbRef"/>
+ </xsd:complexType>
+ </xsd:element>
+ <xsd:element name="score" minOccurs="0" maxOccurs="unbounded">
+ <xsd:annotation>
+ <xsd:documentation>e.g.: number of identical residues, % id residues, aligmnent score, e-value, p-value, etc.</xsd:documentation>
+ </xsd:annotation>
+ <xsd:complexType>
+ <xsd:attribute name="methodName" type="xsd:string" use="required"/>
+ <xsd:attribute name="scoreValue" type="xsd:string" use="required"/>
+ </xsd:complexType>
+ </xsd:element>
+ <xsd:element name="block" maxOccurs="unbounded">
+ <xsd:complexType>
+ <xsd:sequence>
+ <xsd:element name="segment" maxOccurs="unbounded">
+ <xsd:annotation>
+ <xsd:documentation>the alignment given for a single object</xsd:documentation>
+ <xsd:documentation>the alignment given for a single object</xsd:documentation>
+ </xsd:annotation>
+ <xsd:complexType>
+ <xsd:sequence minOccurs="0">
+ <xsd:element name="cigar" type="data:cigarstring">
+ <xsd:annotation>
+ <xsd:documentation>e.g. 2D23M4I</xsd:documentation>
+ </xsd:annotation>
+ </xsd:element>
+ </xsd:sequence>
+ <xsd:attributeGroup ref="data:region"/>
+ <xsd:attribute name="intObjectId" use="required"/>
+ <xsd:attribute name="strand" use="optional"/>
+ </xsd:complexType>
+ </xsd:element>
+ </xsd:sequence>
+ <xsd:attribute name="blockScore" type="xsd:string" use="optional"/>
+ <xsd:attribute name="blockOrder" type="xsd:integer" use="required"/>
+ </xsd:complexType>
+ </xsd:element>
+ <xsd:element name="geo3d" minOccurs="0" maxOccurs="unbounded">
+ <xsd:annotation>
+ <xsd:documentation>geometrical operation to perform on 3D object</xsd:documentation>
+ </xsd:annotation>
+ <xsd:complexType>
+ <xsd:sequence>
+ <xsd:element name="vector">
+ <xsd:complexType>
+ <xsd:attribute name="x" type="xsd:float" use="required"/>
+ <xsd:attribute name="y" type="xsd:float" use="required"/>
+ <xsd:attribute name="z" type="xsd:float" use="required"/>
+ </xsd:complexType>
+ </xsd:element>
+ <xsd:element name="matrix" maxOccurs="unbounded">
+ <xsd:complexType>
+ <xsd:sequence>
+ <xsd:element name="max11">
+ <xsd:complexType>
+ <xsd:attribute name="coord" type="xsd:float"
+ use="required"/>
+ </xsd:complexType>
+ </xsd:element>
+ <xsd:element name="max12">
+ <xsd:complexType>
+ <xsd:attribute name="coord" type="xsd:float"
+ use="required"/>
+ </xsd:complexType>
+ </xsd:element>
+ <xsd:element name="max13">
+ <xsd:complexType>
+ <xsd:attribute name="coord" type="xsd:float"
+ use="required"/>
+ </xsd:complexType>
+ </xsd:element>
+ <xsd:element name="max21">
+ <xsd:complexType>
+ <xsd:attribute name="coord" type="xsd:float"
+ use="required"/>
+ </xsd:complexType>
+ </xsd:element>
+ <xsd:element name="max22">
+ <xsd:complexType>
+ <xsd:attribute name="coord" type="xsd:float"
+ use="required"/>
+ </xsd:complexType>
+ </xsd:element>
+ <xsd:element name="max23">
+ <xsd:complexType>
+ <xsd:attribute name="coord" type="xsd:float"
+ use="required"/>
+ </xsd:complexType>
+ </xsd:element>
+ <xsd:element name="max31">
+ <xsd:complexType>
+ <xsd:attribute name="coord" type="xsd:float"
+ use="required"/>
+ </xsd:complexType>
+ </xsd:element>
+ <xsd:element name="max32">
+ <xsd:complexType>
+ <xsd:attribute name="coord" type="xsd:float"
+ use="required"/>
+ </xsd:complexType>
+ </xsd:element>
+ <xsd:element name="max33">
+ <xsd:complexType>
+ <xsd:attribute name="coord" type="xsd:float"
+ use="required"/>
+ </xsd:complexType>
+ </xsd:element>
+ </xsd:sequence>
+ </xsd:complexType>
+ </xsd:element>
+ </xsd:sequence>
+ <xsd:attribute name="intObjectId" type="xsd:string" use="required"/>
+ </xsd:complexType>
+ </xsd:element>
+ </xsd:sequence>
+ <xsd:attribute name="alignType" type="xsd:string" use="required"/>
+ </xsd:complexType>
+ </xsd:element>
+</xsd:schema>
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git://source.jalview.org / jalview.git / blobdiff