jalview 2.0 XML schema versions for backwards compatibility in future castor upgrades

[jalview.git] / schemas / vamsasJvV1.xsd

diff --git a/schemas/vamsasJvV1.xsd b/schemas/vamsasJvV1.xsd
new file mode 100644 (file)
index 0000000..b830c94
--- /dev/null
+++ b/schemas/vamsasJvV1.xsd
@@ -0,0 +1,74 @@
+<?xml version="1.0" encoding="UTF-8"?>\r
+<!-- edited with XMLSpy v2006 sp1 U (http://www.altova.com) by ioh[ (o[ih[oh) -->\r
+<xs:schema xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:vamsas="www.vamsas.org" targetNamespace="www.vamsas.org" elementFormDefault="qualified" attributeFormDefault="unqualified">\r
+       <xs:complexType name="VAMSAS">\r
+               <xs:sequence>\r
+                       <xs:element name="Alignment" minOccurs="0" maxOccurs="unbounded">\r
+                               <xs:complexType>\r
+                                       <xs:sequence>\r
+                                               <xs:element name="Annotation" minOccurs="0">\r
+                                                       <xs:complexType>\r
+                                                               <xs:sequence>\r
+                                                                       <xs:element ref="vamsas:annotationElement" maxOccurs="unbounded"/>\r
+                                                                       <xs:element name="label" type="xs:string"/>\r
+                                                                       <xs:element name="description" type="xs:string"/>\r
+                                                               </xs:sequence>\r
+                                                               <xs:attribute name="graph" type="xs:boolean" use="required"/>\r
+                                                               <xs:attribute name="graphType" type="xs:int" use="optional"/>\r
+                                                       </xs:complexType>\r
+                                               </xs:element>\r
+                                               <xs:element ref="vamsas:SequenceSet"/>\r
+                                       </xs:sequence>\r
+                               </xs:complexType>\r
+                       </xs:element>\r
+                       <xs:element name="Tree" type="xs:string" minOccurs="0" maxOccurs="unbounded"/>\r
+                       <xs:element ref="vamsas:SequenceSet" minOccurs="0" maxOccurs="unbounded"/>\r
+               </xs:sequence>\r
+       </xs:complexType>\r
+       <xs:element name="SequenceSet">\r
+               <xs:complexType>\r
+                       <xs:sequence>\r
+                               <xs:element name="Sequence" type="vamsas:SequenceType" maxOccurs="unbounded"/>\r
+                               <xs:element name="Annotation" minOccurs="0" maxOccurs="unbounded">\r
+                                       <xs:complexType>\r
+                                               <xs:sequence>\r
+                                                       <xs:element name="description" type="xs:string" minOccurs="0"/>\r
+                                                       <xs:element name="status" type="xs:string" minOccurs="0"/>\r
+                                                       <xs:element ref="vamsas:annotationElement" minOccurs="0" maxOccurs="unbounded"/>\r
+                                               </xs:sequence>\r
+                                               <xs:attribute name="type" type="xs:string" use="required"/>\r
+                                               <xs:attribute name="end" type="xs:string" use="required"/>\r
+                                               <xs:attribute name="begin" type="xs:string" use="required"/>\r
+                                               <xs:attribute name="seqRef" type="xs:string" use="required"/>\r
+                                       </xs:complexType>\r
+                               </xs:element>\r
+                       </xs:sequence>\r
+                       <xs:attribute name="gapChar" type="xs:string" use="required"/>\r
+                       <xs:attribute name="aligned" type="xs:boolean" use="optional"/>\r
+               </xs:complexType>\r
+       </xs:element>\r
+       <xs:element name="annotationElement">\r
+               <xs:complexType>\r
+                       <xs:sequence>\r
+                               <xs:element name="displayCharacter" type="xs:string"/>\r
+                               <xs:element name="description" type="xs:string"/>\r
+                               <xs:element name="secondaryStructure">\r
+                                       <xs:simpleType>\r
+                                               <xs:restriction base="xs:string">\r
+                                                       <xs:length value="1"/>\r
+                                               </xs:restriction>\r
+                                       </xs:simpleType>\r
+                               </xs:element>\r
+                               <xs:element name="value" type="xs:float"/>\r
+                       </xs:sequence>\r
+                       <xs:attribute name="position" type="xs:int" use="required"/>\r
+               </xs:complexType>\r
+       </xs:element>\r
+       <xs:complexType name="SequenceType">\r
+               <xs:sequence>\r
+                       <xs:element name="sequence" type="xs:string"/>\r
+                       <xs:element name="name" type="xs:string"/>\r
+               </xs:sequence>\r
+               <xs:attribute name="id" type="xs:string"/>\r
+       </xs:complexType>\r
+</xs:schema>\r