created features report

[proteocache.git] / server / compbio / controllers / SSFeaturesController.java

diff --git a/server/compbio/controllers/SSFeaturesController.java b/server/compbio/controllers/SSFeaturesController.java
new file mode 100644 (file)
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--- /dev/null
+++ b/server/compbio/controllers/SSFeaturesController.java
@@ -0,0 +1,86 @@
+package compbio.controllers;
+
+import java.util.List;
+import java.util.Map;
+
+import org.springframework.stereotype.Controller;
+import org.springframework.web.bind.annotation.RequestMapping;
+import org.springframework.web.bind.annotation.RequestMethod;
+import org.springframework.web.bind.annotation.RequestParam;
+
+import compbio.cassandra.ProteinBean;
+import compbio.cassandra.TotalByCounterBean;
+import compbio.statistic.CassandraRequester;
+
+/**
+ * Spring controller for sequence queries. This version works in the servlet
+ * style.
+ * 
+ * @author Alexander Sherstnev
+ * @author Natasha Sherstneva
+ * 
+ * @since 0.5
+ * @version 1.0 December 2013
+ */
+@Controller
+@RequestMapping("/features")
+public class SSFeaturesController extends BasicController {
+
+               @RequestMapping(value = "query", method = RequestMethod.GET)
+               public String formCounterQuery(Map<String, Object> model) {
+                       model.put("username", getPrincipalName());
+                       model.put("type", 'E');
+                       model.put("value", 80);
+                       return "query/SSFeatures";
+               }
+                       
+               @RequestMapping(value = "features/results", method = RequestMethod.GET)
+               public String countSequences(@RequestParam("TypeFeatures") String typeFeature, @RequestParam("Percent") String percent,Map<String, Object> model) {
+                       model.put("username", getPrincipalName());
+                       final long startTime = System.currentTimeMillis();
+
+                       if (percent.equals("")) {
+                               model.put("error", "The value must not be empty");
+                               model.put("type", typeFeature);
+                               model.put("value", percent);
+                               return "query/SSFeatures";
+                       }
+
+                       int realpercent;
+                       try {
+                               realpercent = Integer.parseInt(percent.trim());
+                       } catch (NumberFormatException e) {
+                               model.put("error", "The value must be an integer number");
+                               model.put("value", percent);
+                               return "query/SSFeatures";
+                       }
+
+                       if (realpercent < 1) {
+                               model.put("error", "The value must be greater than 0");
+                               model.put("value", percent);
+                               return "query/SSFeatures";
+                       }
+                       
+                       if (realpercent > 100) {
+                               model.put("error", "The value must be less than 100");
+                               model.put("value", percent);
+                               return "query/SSFeatures";
+                       }
+
+                       CassandraRequester cr = new CassandraRequester();
+                       Map<String, String> r = cr.readProteinsPrediction(typeFeature, realpercent);
+                       model.put("results", r);
+                       model.put("njobs", 0);
+                       if (null != r) {
+                               model.put("njobs", r.size());
+                       }
+                       final long endTime = System.currentTimeMillis();
+                       model.put("timeExecution", (endTime - startTime));
+                       model.put("feature", typeFeature);
+                       model.put("percent", realpercent);
+                       return "reportSSFeatures";
+               }
+
+       
+
+}