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[proteocache.git] / server / compbio / controllers / SequenceController.java

diff --git a/server/compbio/controllers/SequenceController.java b/server/compbio/controllers/SequenceController.java
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+++ b/server/compbio/controllers/SequenceController.java
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+package compbio.controllers;
+
+import java.util.List;
+import java.util.Map;
+
+import org.springframework.stereotype.Controller;
+import org.springframework.web.bind.annotation.RequestMapping;
+import org.springframework.web.bind.annotation.RequestMethod;
+import org.springframework.web.bind.annotation.RequestParam;
+
+import compbio.cassandra.DataBase;
+
+import compbio.statistic.CassandraRequester;
+
+/**
+ * @author Alexander Sherstnev
+ * @author Natasha Sherstneva
+ */
+@Controller
+public class SequenceController {
+
+       @RequestMapping(value = "/sequence/query1", method = RequestMethod.GET)
+       public String formSequenceQuery(Map<String, Object> model) {
+               model.put("value", "AAAAA");
+               return "queryProteinSequence";
+       }
+
+       @RequestMapping(value = "/sequence/query2", method = RequestMethod.GET)
+       public String formCounterQuery(Map<String, Object> model) {
+               model.put("value", 5);
+               return "queryProteinSequenceCounter";
+       }
+       
+       @RequestMapping(value = "/sequence/querysequence", method = RequestMethod.GET)
+       public String findSequence(@RequestParam("sequence") String sequence, @RequestParam("protein") String flag, Map<String, Object> model) {
+               final long startTime = System.currentTimeMillis();
+
+               String trimmedsequence = sequence.replaceAll("\\s", "");
+               model.put("njobs", 0);
+               model.put("prot", trimmedsequence);
+               model.put("flag", flag);
+
+               if (0 < trimmedsequence.length()) {
+                       CassandraRequester cr = new CassandraRequester();
+                       List<DataBase> r = cr.readProteins(trimmedsequence, flag);
+                       model.put("results", r);
+                       if (null != r) {
+                               System.out.println("result size = " + r.size());
+                               model.put("njobs", r.size());
+                       }
+               }
+               final long endTime = System.currentTimeMillis();
+               model.put("timeExecution", (endTime - startTime));
+               return "reportProteinSequences";
+       }
+
+       @RequestMapping(value = "/sequence/querycounter", method = RequestMethod.GET)
+       public String countSequences(@RequestParam("counterJob") int counter, Map<String, Object> model) {
+               final long startTime = System.currentTimeMillis();
+
+               if (counter < 1) {
+                       model.put("error", "The value must be greater than 0");
+                       model.put("value", counter);
+                       return "queryProteinSequenceCounter";
+               }
+
+               CassandraRequester cr = new CassandraRequester();
+               List<DataBase> r = cr.readProteinByCounter(counter);
+               model.put("results", r);
+               model.put("njobs", 0);
+               if (null != r) {
+                       model.put("njobs", r.size());
+               }
+               final long endTime = System.currentTimeMillis();
+               model.put("timeExecution", (endTime - startTime));
+               model.put("counter", counter);
+               return "reportProteinSequencesCounter";
+       }
+
+}