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[proteocache.git] / server / compbio / controllers / SequenceSearchController.java

diff --git a/server/compbio/controllers/SequenceSearchController.java b/server/compbio/controllers/SequenceSearchController.java
deleted file mode 100644 (file)
index 53bfcfc..0000000
--- a/server/compbio/controllers/SequenceSearchController.java
+++ /dev/null
@@ -1,72 +0,0 @@
-package compbio.controllers;
-
-import java.util.List;
-import java.util.Map;
-
-import org.springframework.stereotype.Controller;
-import org.springframework.web.bind.annotation.RequestMapping;
-import org.springframework.web.bind.annotation.RequestMethod;
-import org.springframework.web.bind.annotation.RequestParam;
-
-import compbio.cassandra.DataBase;
-
-import compbio.statistic.CassandraRequester;
-
-/**
- * @author Alexander Sherstnev
- * @author Natasha Sherstneva
- */
-@Controller
-public class SequenceSearchController {
-
-       @RequestMapping(value = "/sequence/query1", method = RequestMethod.GET)
-       public String formSequenceQuery(Map<String, Object> model) {
-               return "queryProteinSequence";
-       }
-
-       @RequestMapping(value = "/sequence/query2", method = RequestMethod.GET)
-       public String formCounterQuery(Map<String, Object> model) {
-               return "queryProteinSequenceCounter";
-       }
-       
-       @RequestMapping(value = "/sequence/querysequence", method = RequestMethod.GET)
-       public String findSequence(@RequestParam("sequence") String sequence, @RequestParam("protein") String flag, Map<String, Object> model) {
-               final long startTime = System.currentTimeMillis();
-
-               String trimmedsequence = sequence.replaceAll("\\s", "");
-               model.put("njobs", 0);
-               model.put("prot", trimmedsequence);
-               model.put("flag", flag);
-
-               if (0 < trimmedsequence.length()) {
-                       CassandraRequester cr = new CassandraRequester();
-                       List<DataBase> r = cr.readProteins(trimmedsequence, flag);
-                       model.put("results", r);
-                       if (null != r) {
-                               System.out.println("result size = " + r.size());
-                               model.put("njobs", r.size());
-                       }
-               }
-               final long endTime = System.currentTimeMillis();
-               model.put("timeExecution", (endTime - startTime));
-               return "reportProteinSequences";
-       }
-
-       @RequestMapping(value = "/sequence/querycounter", method = RequestMethod.GET)
-       public String countSequences(@RequestParam("counterJob") int counter, Map<String, Object> model) {
-               final long startTime = System.currentTimeMillis();
-
-               CassandraRequester cr = new CassandraRequester();
-               List<DataBase> r = cr.readProteinByCounter(counter);
-               model.put("results", r);
-               model.put("njobs", 0);
-               if (null != r) {
-                       model.put("njobs", r.size());
-               }
-               final long endTime = System.currentTimeMillis();
-               model.put("timeExecution", (endTime - startTime));
-               model.put("counter", counter);
-               return "reportProteinSequencesCounter";
-       }
-
-}