First working Spring-based version

[proteocache.git] / server / compbio / controllers / SequenceSearchController.java

diff --git a/server/compbio/controllers/SequenceSearchController.java b/server/compbio/controllers/SequenceSearchController.java
new file mode 100644 (file)
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+++ b/server/compbio/controllers/SequenceSearchController.java
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+
+package compbio.controllers;
+
+
+import java.util.List;
+import java.util.Map;
+
+import org.springframework.beans.factory.annotation.Autowired;
+import org.springframework.stereotype.Controller;
+import org.springframework.validation.BindingResult;
+import org.springframework.web.bind.WebDataBinder;
+import org.springframework.web.bind.annotation.InitBinder;
+import org.springframework.web.bind.annotation.ModelAttribute;
+import org.springframework.web.bind.annotation.PathVariable;
+import org.springframework.web.bind.annotation.RequestMapping;
+import org.springframework.web.bind.annotation.RequestMethod;
+import org.springframework.web.bind.annotation.RequestParam;
+
+import compbio.cassandra.DataBase;
+
+import compbio.statistic.CassandraRequester;
+
+/**
+ * @author Alexander Sherstnev
+ * @author Natasha Sherstneva
+ */
+@Controller
+public class SequenceSearchController {
+
+       @RequestMapping(value = "/sequence", method = RequestMethod.GET)
+       public String initFindForm(Map<String, Object> model) {
+               return "QuerySequenceProtein";
+       }
+
+       @RequestMapping(value = "/sequence/query", method = RequestMethod.GET)
+       public String findSequence(@RequestParam("prot") String prot, @RequestParam("protein") String flag,
+                       @RequestParam("Search") String search, @RequestParam("counterJob") int counter, Map<String, Object> model) {
+               final long startTime = System.currentTimeMillis();
+               CassandraRequester cr = new CassandraRequester();
+               if (search.equals("SearchCounter")) {
+                       List<DataBase> r = cr.readProteinByCounter(counter);
+                       model.put("results", r);
+                       model.put("njobs", r.size());
+                       System.out.println("Search counter = " + counter + ": " + r.size() + " proteins found");
+               } else {
+                       List<DataBase> r = cr.readProteins(prot, flag);
+                       model.put("results", r);
+                       model.put("njobs", r.size());
+                       //System.out.println("Search sequence: " + r.size() + " proteins found");
+               }
+               final long endTime = System.currentTimeMillis();
+               model.put("timeExecution", (endTime - startTime));
+               model.put("prot", prot);
+               model.put("flag", flag);
+               model.put("search", search);
+               model.put("counter", counter);
+               return "ReportSequenceProtein";
+       }
+
+}