private ArrayList<DataBase> query;
private static long currentDate = 0;
private static long earlestDate = 0;
+ private final static SimpleDateFormat formatYYMMDD = new SimpleDateFormat("yyyy/MM/dd");
+ private final static SimpleDateFormat formatDDMMYY = new SimpleDateFormat("dd/MM/yyyy");
/*
* query: execution time for the period from date1 till date2
if (null == date2) {
date1 = "2100/1/1";
}
- if (!isThisDateValid(date1) || !isThisDateValid(date2)) {
+ if (!isThisDateValid(date1,formatYYMMDD) || !isThisDateValid(date2,formatYYMMDD)) {
System.out.println("Wrong date: point 3");
return null;
}
SetDateRange();
int nbins = 5;
- long dateStart = DateParsing(date1);
- long dateEnd = DateParsing(date2);
+ long dateStart = DateParsing(date1, formatYYMMDD);
+ long dateEnd = DateParsing(date2, formatYYMMDD);
if (dateEnd < earlestDate || dateStart > currentDate || dateStart > dateEnd)
return null;
if (dateStart < earlestDate)
if (null == date2) {
date1 = "2100/1/1";
}
- if (!isThisDateValid(date1) || !isThisDateValid(date2)) {
+ if (!isThisDateValid(date1, formatYYMMDD) || !isThisDateValid(date2, formatYYMMDD)) {
System.out.println("Wrong date: point 3");
return null;
}
SetDateRange();
- long dateStart = DateParsing(date1);
- long dateEnd = DateParsing(date2);
+ long dateStart = DateParsing(date1, formatYYMMDD);
+ long dateEnd = DateParsing(date2, formatYYMMDD);
if (dateEnd < earlestDate || dateStart > currentDate || dateStart > dateEnd)
return null;
if (dateStart < earlestDate)
* query: protein sequence
* */
public List<DataBase> readProteins(String protIn, String flag) {
+ if (protIn == null)
+ return null;
+ System.out.println(protIn.length());
query = new ArrayList<DataBase>();
List<AnnotatedProteinSequenceBean> res;
if (flag.equals("whole"))
res = db.ReadWholeSequence(protIn);
else
- res = db.ReadPartOfSequence(protIn);
+ res = (protIn.length() > 0) ? db.ReadPartOfSequence(protIn) : null;
if (res == null)
return null;
for (AnnotatedProteinSequenceBean entry : res) {
* query jobs log info
*/
public DataBase readJobLog(String jobid) {
- // query = new ArrayList<DataBase>();
+ if (jobid == null)
+ return null;
StructureJobLog res = db.ReadJobLog(jobid);
+ if (res == null)
+ return null;
DataBase query = new DataBase();
query.setLogInfo(res);
- // query.setres);
return query;
}
+
/*
* create list of parts of protein sequence;
*/
/*
* convert String date into long date (miliseconds since the epoch start)
*/
- private static long DateParsing(String datInput) {
+ private static long DateParsing(String datInput, SimpleDateFormat formatter) {
if (datInput == null) {
return 0;
}
long dateWorkSt = 0;
- SimpleDateFormat formatter = new SimpleDateFormat("yyyy/MM/dd");
+
try {
dateWorkSt = formatter.parse(datInput).getTime();
} catch (ParseException e) {
*/
private static void SetDateRange() {
Calendar cal = Calendar.getInstance();
- currentDate = DateParsing(cal.get(Calendar.YEAR) + "/" + (cal.get(Calendar.MONTH) + 1) + "/" + cal.get(Calendar.DAY_OF_MONTH));
+ currentDate = DateParsing(cal.get(Calendar.YEAR) + "/" + (cal.get(Calendar.MONTH) + 1) + "/" + cal.get(Calendar.DAY_OF_MONTH), formatYYMMDD);
if (0 == earlestDate) {
CassandraRequester cr = new CassandraRequester();
earlestDate = cr.earliestDate();
}
}
- public boolean isThisDateValid(String dateToValidate) {
+ public boolean isThisDateValid(String dateToValidate, SimpleDateFormat sdf) {
if (dateToValidate == null || dateToValidate.equals("")) {
System.out.println("Undefined date");
return false;
}
- SimpleDateFormat sdf = new SimpleDateFormat("yyyy/MM/dd");
try {
// if not valid, this will throw ParseException
sdf.setLenient(false);