Formatted source

[jalview.git] / src / MCview / Bond.java

diff --git a/src/MCview/Bond.java b/src/MCview/Bond.java
index c84152a..17f66bb 100755 (executable)
--- a/src/MCview/Bond.java
+++ b/src/MCview/Bond.java
@@ -16,69 +16,69 @@
 * along with this program; if not, write to the Free Software\r
 * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA  02110-1301, USA\r
 */\r
-\r
 package MCview;\r
 \r
 import java.awt.*;\r
 \r
-public class Bond {\r
-\r
-  float start[];\r
-  float end[];\r
-\r
-  Color startCol;\r
-  Color endCol;\r
-\r
-  public myAtom at1;\r
-  public myAtom at2;\r
-\r
-  public Bond(float[] start, float[] end, myAtom at1, myAtom at2) {\r
-    this.start    = start;\r
-    this.end      = end;\r
-    this.startCol = at1.color;\r
-    this.endCol   = at2.color;\r
-    this.at1      = at1;\r
-    this.at2      = at2;\r
-  }\r
-  public Bond(Bond bond) {\r
-    this.start    = new float[3];\r
-\r
-    this.start[0] = bond.start[0];\r
-    this.start[1] = bond.start[1];\r
-    this.start[2] = bond.start[2];\r
-\r
-    this.end    = new float[3];\r
 \r
-    this.end[0] = bond.end[0];\r
-    this.end[1] = bond.end[1];\r
-    this.end[2] = bond.end[2];\r
-\r
-    this.startCol = bond.startCol;\r
-    this.endCol   = bond.endCol;\r
-  }\r
-\r
-  public void print() {\r
-    System.out.println("Start " + start[0] + " "+ start[1] + " " + start[2]);\r
-    System.out.println("End   " + end[0] + " "+ end[1] + " " + end[2]);\r
-  }\r
-\r
-  public float length() {\r
-    float len = (end[0] - start[0])*(end[0] - start[0]) +\r
-                (end[1] - start[1])*(end[1] - start[1]) +\r
-                (end[2] - start[2])*(end[2] - start[2]);\r
-\r
-    len = (float)(Math.sqrt(len));\r
-\r
-    return len;\r
-  }\r
-  public void translate(float x, float y, float z) {\r
-    start[0] = (start[0] + x);\r
-    end[0]   = (end[0] + x);\r
-\r
-    start[1] = (start[1] + y);\r
-    end[1]   = (end[1] + y);\r
-\r
-    start[2] = (start[2] + z);\r
-    end[2]   = (end[2] + z);\r
-  }\r
+public class Bond {\r
+    float[] start;\r
+    float[] end;\r
+    Color startCol;\r
+    Color endCol;\r
+    public myAtom at1;\r
+    public myAtom at2;\r
+\r
+    public Bond(float[] start, float[] end, myAtom at1, myAtom at2) {\r
+        this.start = start;\r
+        this.end = end;\r
+        this.startCol = at1.color;\r
+        this.endCol = at2.color;\r
+        this.at1 = at1;\r
+        this.at2 = at2;\r
+    }\r
+\r
+    public Bond(Bond bond) {\r
+        this.start = new float[3];\r
+\r
+        this.start[0] = bond.start[0];\r
+        this.start[1] = bond.start[1];\r
+        this.start[2] = bond.start[2];\r
+\r
+        this.end = new float[3];\r
+\r
+        this.end[0] = bond.end[0];\r
+        this.end[1] = bond.end[1];\r
+        this.end[2] = bond.end[2];\r
+\r
+        this.startCol = bond.startCol;\r
+        this.endCol = bond.endCol;\r
+    }\r
+\r
+    public void print() {\r
+        System.out.println("Start " + start[0] + " " + start[1] + " " +\r
+            start[2]);\r
+        System.out.println("End   " + end[0] + " " + end[1] + " " + end[2]);\r
+    }\r
+\r
+    public float length() {\r
+        float len = ((end[0] - start[0]) * (end[0] - start[0])) +\r
+            ((end[1] - start[1]) * (end[1] - start[1])) +\r
+            ((end[2] - start[2]) * (end[2] - start[2]));\r
+\r
+        len = (float) (Math.sqrt(len));\r
+\r
+        return len;\r
+    }\r
+\r
+    public void translate(float x, float y, float z) {\r
+        start[0] = (start[0] + x);\r
+        end[0] = (end[0] + x);\r
+\r
+        start[1] = (start[1] + y);\r
+        end[1] = (end[1] + y);\r
+\r
+        start[2] = (start[2] + z);\r
+        end[2] = (end[2] + z);\r
+    }\r
 }\r