refactor to allow distinct StructureSelectionManager instances for

[jalview.git] / src / MCview / PDBCanvas.java

diff --git a/src/MCview/PDBCanvas.java b/src/MCview/PDBCanvas.java
old mode 100755 (executable)
new mode 100644 (file)
index 3b00418..ed4cc1b
--- a/src/MCview/PDBCanvas.java
+++ b/src/MCview/PDBCanvas.java
@@ -124,7 +124,7 @@ public class PDBCanvas extends JPanel implements MouseListener,
     this.pdbentry = pdbentry;
     this.sequence = seq;
 
-    ssm = StructureSelectionManager.getStructureSelectionManager();
+    ssm = ap.av.getStructureSelectionManager();
 
     try
     {
@@ -173,8 +173,8 @@ public class PDBCanvas extends JPanel implements MouseListener,
       // Now lets compare the sequences to get
       // the start and end points.
       // Align the sequence to the pdb
-      AlignSeq as = new AlignSeq(sequence, ((PDBChain) pdb.chains
-              .elementAt(i)).sequence, "pep");
+      AlignSeq as = new AlignSeq(sequence,
+              ((PDBChain) pdb.chains.elementAt(i)).sequence, "pep");
       as.calcScoreMatrix();
       as.traceAlignment();
       PrintStream ps = new PrintStream(System.out)
@@ -1069,7 +1069,8 @@ public class PDBCanvas extends JPanel implements MouseListener,
   // /StructureListener
   public String[] getPdbFile()
   {
-    return new String[] { pdbentry.getFile() };
+    return new String[]
+    { pdbentry.getFile() };
   }
 
   String lastMessage;
@@ -1156,4 +1157,11 @@ public class PDBCanvas extends JPanel implements MouseListener,
     repaint();
   }
 
+  @Override
+  public void releaseReferences(Object svl)
+  {
+    // TODO Auto-generated method stub
+    
+  }
+
 }