JAL-1919 refined structure view annotation settings to work for both PDB and mmCIF

[jalview.git] / src / MCview / PDBChain.java

diff --git a/src/MCview/PDBChain.java b/src/MCview/PDBChain.java
index f4263b1..91526e1 100755 (executable)
--- a/src/MCview/PDBChain.java
+++ b/src/MCview/PDBChain.java
@@ -30,6 +30,7 @@ import jalview.datamodel.SequenceI;
 import jalview.schemes.ColourSchemeI;
 import jalview.schemes.ResidueProperties;
 import jalview.structure.StructureMapping;
+import jalview.structure.StructureViewSettings;
 
 import java.awt.Color;
 import java.util.List;
@@ -423,11 +424,15 @@ public class PDBChain
 
     // System.out.println("PDB Sequence is :\nSequence = " + seq);
     // System.out.println("No of residues = " + residues.size());
+
+    if (StructureViewSettings.isShowSeqFeatures())
+    {
     for (i = 0, iSize = resFeatures.size(); i < iSize; i++)
     {
       sequence.addSequenceFeature(resFeatures.elementAt(i));
       resFeatures.setElementAt(null, i);
     }
+    }
     if (visibleChainAnnotation)
     {
       Annotation[] annots = new Annotation[resAnnotation.size()];