sequence is char []

[jalview.git] / src / MCview / PDBChain.java

diff --git a/src/MCview/PDBChain.java b/src/MCview/PDBChain.java
index ddf05e1..0cb9f02 100755 (executable)
--- a/src/MCview/PDBChain.java
+++ b/src/MCview/PDBChain.java
@@ -236,15 +236,15 @@ public class PDBChain {
             try {\r
               b = (Bond) bonds.elementAt(i);\r
 \r
-              ( (Bond) bonds.elementAt(i)).startCol = cs.findColour(\r
-                  ResidueProperties.aa[ ( (Integer) ResidueProperties.aa3Hash.\r
-                                         get(b.at1.resName)).intValue()]\r
+            /*  ( (Bond) bonds.elementAt(i)).startCol = cs.findColour(\r
+                  ResidueProperties.codonTranslate(\r
+                      ResidueProperties.aa3Hash.get(b.at1.resName).toString().charAt(0)\r
                   );\r
 \r
               b.endCol = cs.findColour(\r
                   ResidueProperties.aa[ ( (Integer) ResidueProperties.aa3Hash.\r
                                          get(b.at2.resName)).intValue()]\r
-                  );\r
+                  );*/\r
 \r
             } catch (Exception e)\r
             {\r