\r
Vector lineArray = new Vector();\r
\r
+ public PDBfile(String [] lines)\r
+ {\r
+ for(int i=0; i<lines.length; i++)\r
+ lineArray.add(lines[i]);\r
+\r
+ noLines = lineArray.size();\r
+ parse();\r
+ }\r
+\r
public PDBfile(String inFile, String inType) throws IOException {\r
\r
super(inFile,inType);\r
\r
public void parse() {\r
\r
- System.out.println("Parsing");\r
-\r
for (int i = 0; i < lineArray.size(); i++) {\r
StringTokenizer str = new StringTokenizer(lineArray.elementAt(i).toString());\r
if (str.hasMoreTokens()) {\r
try {\r
myAtom tmpatom = new myAtom(str);\r
if (findChain(tmpatom.chain) != null) {\r
- System.out.println("Adding to chain " + tmpatom.chain);\r
+ // System.out.println("Adding to chain " + tmpatom.chain);\r
findChain(tmpatom.chain).atoms.addElement(tmpatom);\r
} else {\r
- System.out.println("Making chain " + tmpatom.chain);\r
+ // System.out.println("Making chain " + tmpatom.chain);\r
PDBChain tmpchain = new PDBChain(tmpatom.chain);\r
chains.addElement(tmpchain);\r
tmpchain.atoms.addElement(tmpatom);\r