2.08, not 2.07

[jalview.git] / src / MCview / Residue.java

diff --git a/src/MCview/Residue.java b/src/MCview/Residue.java
index 6e058f3..0f24137 100755 (executable)
--- a/src/MCview/Residue.java
+++ b/src/MCview/Residue.java
@@ -1,28 +1,48 @@
+/*\r
+* Jalview - A Sequence Alignment Editor and Viewer\r
+* Copyright (C) 2005 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle\r
+*\r
+* This program is free software; you can redistribute it and/or\r
+* modify it under the terms of the GNU General Public License\r
+* as published by the Free Software Foundation; either version 2\r
+* of the License, or (at your option) any later version.\r
+*\r
+* This program is distributed in the hope that it will be useful,\r
+* but WITHOUT ANY WARRANTY; without even the implied warranty of\r
+* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the\r
+* GNU General Public License for more details.\r
+*\r
+* You should have received a copy of the GNU General Public License\r
+* along with this program; if not, write to the Free Software\r
+* Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA  02110-1301, USA\r
+*/\r
 package MCview;\r
 \r
 import java.util.*;\r
 \r
 \r
 public class Residue {\r
-  Vector atoms = new Vector();\r
+    Vector atoms = new Vector();\r
+    int number;\r
+    int count;\r
+    int seqnumber;\r
 \r
-  int number;\r
-  int count;\r
-  int seqnumber;\r
-\r
-  public Residue(Vector atoms, int number, int count) {\r
-    this.atoms  = atoms;\r
-    this.number = number;\r
-    this.count  = count;\r
-  }\r
+    public Residue(Vector atoms, int number, int count) {\r
+        this.atoms = atoms;\r
+        this.number = number;\r
+        this.count = count;\r
+    }\r
 \r
-  public myAtom findAtom(String name) {\r
+    public Atom findAtom(String name)\r
+    {\r
+        for (int i = 0; i < atoms.size(); i++)\r
+        {\r
+            if (((Atom) atoms.elementAt(i)).name.equals(name))\r
+            {\r
+                return (Atom) atoms.elementAt(i);\r
+            }\r
+        }\r
 \r
-    for (int i = 0; i < atoms.size(); i++) {\r
-      if (((myAtom)atoms.elementAt(i)).name.equals(name)) {\r
-        return (myAtom)atoms.elementAt(i);\r
-      }\r
+        return null;\r
     }\r
-    return null;\r
-  }\r
 }\r