JAL-3026 MCview -> mc_view

[jalview.git] / src / MCview / Zsort.java

diff --git a/src/MCview/Zsort.java b/src/MCview/Zsort.java
deleted file mode 100755 (executable)
index 6bdbafa..0000000
--- a/src/MCview/Zsort.java
+++ /dev/null
@@ -1,80 +0,0 @@
-/*
- * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
- * Copyright (C) $$Year-Rel$$ The Jalview Authors
- * 
- * This file is part of Jalview.
- * 
- * Jalview is free software: you can redistribute it and/or
- * modify it under the terms of the GNU General Public License 
- * as published by the Free Software Foundation, either version 3
- * of the License, or (at your option) any later version.
- *  
- * Jalview is distributed in the hope that it will be useful, but 
- * WITHOUT ANY WARRANTY; without even the implied warranty 
- * of MERCHANTABILITY or FITNESS FOR A PARTICULAR 
- * PURPOSE.  See the GNU General Public License for more details.
- * 
- * You should have received a copy of the GNU General Public License
- * along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
- * The Jalview Authors are detailed in the 'AUTHORS' file.
- */
-package MCview;
-
-import java.util.Vector;
-
-public class Zsort
-{
-  /**
-   * Sorts the Bond list in ascending order of the z-value of the bond start
-   * atom
-   * 
-   * @param bonds
-   */
-  public void sort(Vector<Bond> bonds)
-  {
-    sort(bonds, 0, bonds.size() - 1);
-  }
-
-  public void sort(Vector<Bond> bonds, int p, int r)
-  {
-    int q;
-
-    if (p < r)
-    {
-      q = partition(bonds, p, r);
-      sort(bonds, p, q);
-      sort(bonds, q + 1, r);
-    }
-  }
-
-  private int partition(Vector<Bond> bonds, int p, int r)
-  {
-    float x = bonds.elementAt(p).start[2];
-    int i = p - 1;
-    int j = r + 1;
-    Bond tmp;
-    while (true)
-    {
-      do
-      {
-        j--;
-      } while ((j >= 0) && (bonds.elementAt(j).start[2] > x));
-
-      do
-      {
-        i++;
-      } while ((i < bonds.size()) && (bonds.elementAt(i).start[2] < x));
-
-      if (i < j)
-      {
-        tmp = bonds.elementAt(i);
-        bonds.setElementAt(bonds.elementAt(j), i);
-        bonds.setElementAt(tmp, j);
-      }
-      else
-      {
-        return j;
-      }
-    }
-  }
-}